Locus 8259

Sequence ID 3L_DroMel_CAF1
Location 21,707,604 – 21,707,724
Length 120
Max. P 0.901945
window13505

overview

Window 5

Location 21,707,604 – 21,707,724
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.41
Mean single sequence MFE -38.37
Consensus MFE -30.44
Energy contribution -31.33
Covariance contribution 0.89
Combinations/Pair 1.09
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 1.02
SVM RNA-class probability 0.901945
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21707604 120 - 23771897
GGCAUCACAAAGGUGCUGAUGGCCUUAACGGGCGUACGUUCAAACUUCAUGCGCUUCCGUCAGUAGUCCAUGAUGAUGCUGUCCUUGAGAUCCGCCUCUAUGAGCGCGCAGUUCAUGGCC
(((((((((..(((((((((((((.....))(((((.(.........).)))))..))))))))).))..)).)))))))..((.((((...((((((...))).)))...)))).)).. ( -38.60)
>DroSec_CAF1 46934 92 - 1
GGCAUCACAAAGGUGCUGAUUUCCUUAACGGGGGUGCGUU-------CAUGCGCCUCCGUCGGUAGUCCAUGAUGAUGCUGUCCUUGAGGGCCGUCU---------------------CC
((((((.....))))))((((.((...(((((((((((..-------..))))))))))).)).))))...((.((((..((((....)))))))))---------------------). ( -36.10)
>DroSim_CAF1 41726 92 - 1
GGCAUCACAAAGGUGCUGAUGGCCUUAACGGGGGUGCGUU-------CAUGCGCCUCCGUCGGUAGUCCAUGAUGAUGCUGUCCUUGAGGCCCGUCU---------------------CC
((((((.....))))))(((((((((((((((((((((..-------..)))))))))))(((((.((......)))))))....))))).))))).---------------------.. ( -40.40)
>consensus
GGCAUCACAAAGGUGCUGAUGGCCUUAACGGGGGUGCGUU_______CAUGCGCCUCCGUCGGUAGUCCAUGAUGAUGCUGUCCUUGAGGCCCGUCU_____________________CC
((((((.....))))))((((((((((((((((((((((.........))))))))))))(((((.((......)))))))....)))))).))))........................ (-30.44 = -31.33 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:42 2006