Locus 8257

Sequence ID 3L_DroMel_CAF1
Location 21,702,884 – 21,702,992
Length 108
Max. P 0.566561
window13502

overview

Window 2

Location 21,702,884 – 21,702,992
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 81.06
Mean single sequence MFE -22.38
Consensus MFE -13.36
Energy contribution -12.37
Covariance contribution -0.99
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.60
SVM decision value 0.07
SVM RNA-class probability 0.566561
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21702884 108 + 23771897
AAAUCACAACUUCCUUAUGACUUGGUAAUUCAUUUAUAAGAAGGUCCGUCACCUUAUAUCUUUAUCUACAUAUGUAUGUACAUAUGCCA--------AAGAC----GCUAGAAUAAGUGU
....(((.((((.(((((((..(((....))).))))))).)))).((((.....(((....)))...(((((((....)))))))...--------..)))----).........))). ( -18.40)
>DroSec_CAF1 40864 119 + 1
AAAUCACAACUUCCUUAUGAUUUAGUAAUUUAUUUAUAGGGAGGUCAGUUACCUCAUAUCUUUAUCUACAUACAUAUGCA-GUAUGCUUCGGCAUGCAAUACUUUUACUCAAAAACGUGC
....(((.((((((((((((..(((....))).))))))))))))..(((....(((((..............)))))..-((((((....))))))................)))))). ( -26.24)
>DroSim_CAF1 35520 119 + 1
AAAUCACAACUUCCUUAUGAUUUGGUAAUUUAUUUAUAAGAAGGUCAGUUACCUCAUAUCUUUAUCUACAUACAUAUGCA-GUAUGCUUCGGCAUGCAAUACUUUUACUCAAAAACGUGC
....(((........(((((...(((((((.((((......)))).))))))))))))......................-((((((....))))))...................))). ( -22.50)
>consensus
AAAUCACAACUUCCUUAUGAUUUGGUAAUUUAUUUAUAAGAAGGUCAGUUACCUCAUAUCUUUAUCUACAUACAUAUGCA_GUAUGCUUCGGCAUGCAAUACUUUUACUCAAAAACGUGC
....(((......(((((((..(((....))).)))))))(((((.....))))).............(((((........)))))..............................))). (-13.36 = -12.37 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:39 2006