Locus 8256

Sequence ID 3L_DroMel_CAF1
Location 21,697,614 – 21,697,704
Length 90
Max. P 0.818107
window13501

overview

Window 1

Location 21,697,614 – 21,697,704
Length 90
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 88.03
Mean single sequence MFE -22.02
Consensus MFE -18.04
Energy contribution -17.73
Covariance contribution -0.31
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.82
SVM decision value 0.67
SVM RNA-class probability 0.818107
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21697614 90 + 23771897
CCCAAAAGUAGGCAGCGCGAAAAUCGUCCAAAAAAUUG-AGCACAAAUGCUGGGAAGUGGCAGCAGCUGCUGCAACCCAUGCACAACCAU--A
..........((..(((((.....))).(((....)))-.)).....(((((((..(..((((...))))..)..)))).)))...))..--. ( -23.10)
>DroSec_CAF1 36296 84 + 1
CCCAAAAGUAGGCAGCGCGAAAAUCGUCCAAAAAAUUG-AGCACAAAUGCUGGGAAGUGGCAGCAGCUGCUGCAACCCAUGCAC--------A
...........((((.(((.....))).).........-((((....))))(((..(..((((...))))..)..))).)))..--------. ( -21.80)
>DroSim_CAF1 31020 84 + 1
CCCAAAAGUAGGCAGCGCGAAAAUCGUCCAAAAAAUUG-AGCACAAAUGCUGGGAAGUGGCAGCAGCUGCUGCAACCCAUGCAC--------A
...........((((.(((.....))).).........-((((....))))(((..(..((((...))))..)..))).)))..--------. ( -21.80)
>DroEre_CAF1 35261 92 + 1
CCCAAAAGUAGGCAGUGGG-AAAUCGUACAAAAAAACGUAGCACAAAUACUGGGAAGUGGCAGCAGCUGCUGCAACCCACACAUAUACAUACA
.......(((....(((((-...........................((((....))))(((((....)))))..))))).....)))..... ( -21.40)
>consensus
CCCAAAAGUAGGCAGCGCGAAAAUCGUCCAAAAAAUUG_AGCACAAAUGCUGGGAAGUGGCAGCAGCUGCUGCAACCCAUGCAC________A
..............(((......................((((....))))(((..(..((((...))))..)..))).)))........... (-18.04 = -17.73 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:38 2006