| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,697,407 – 21,697,512 |
| Length | 105 |
| Max. P | 0.738516 |
| Location | 21,697,407 – 21,697,512 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.51 |
| Mean single sequence MFE | -44.27 |
| Consensus MFE | -28.33 |
| Energy contribution | -29.33 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21697407 105 - 23771897 GUUGAGGACUUGG-AGGAGGUCCGAUUGCCGGGGUGUUCCGGCAAAAAGGGCGUGACACACAUCCUUACAAACAGUCCAAU----------CUCCUUUG-GCCAAGCCAGCGGGUCA ......(((((((-(((((((..((((((((((....))))))...((((..(((...)))..))))......))))..))----------))))))((-((...)))).)))))). ( -39.40) >DroSec_CAF1 36088 106 - 1 ACUGAGGGCCUGG-AGGGGGUCCGAUUGCCGGGGUGUUCCGGCUAAAAGGGCGUGACACACAUCCUUACAAACAGUCCAGU----------CUCCUUUGGGCCAAGCCAGCGAGCCA .(((..((((..(-((((((...((((((((((....))))))...((((..(((...)))..))))......))))...)----------))))))..))))....)))....... ( -41.60) >DroSim_CAF1 30802 116 - 1 ACUGAGGGCCUGG-AGGGGGUCCGAUUGCCGGGGUGUUCCGGCUAAAAGGGCGUGACACACAUCCUUACAAACAGUCCAGUCGACUGGACUCUCCUUUGGGCCAAGCCAGCGGGCCA ......((((..(-(((((((((....((((((....)))))).....))))(((...)))............(((((((....)))))))))))))..))))..(((....))).. ( -52.60) >DroEre_CAF1 35035 104 - 1 GCUGAGGGGCUGGAAGGGGGUCAGAUUGCCAGGGCGUU---GCAAAGGGGGCGUGACACACAUCUUUAUAGGCAGUGUAAU----------CUCCUUUGGGCCAAGUCAGCGGGCCG (((((..((((.(((((((((.(.((((((...(((((---.(....).)))))((......))......)))))).).))----------))))))).))))...)))))...... ( -43.50) >consensus ACUGAGGGCCUGG_AGGGGGUCCGAUUGCCGGGGUGUUCCGGCAAAAAGGGCGUGACACACAUCCUUACAAACAGUCCAAU__________CUCCUUUGGGCCAAGCCAGCGGGCCA ......((((((...((.(((((((((((((((....)))))))).((((..(((...)))..)))).............................)))))))...))..)))))). (-28.33 = -29.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:37 2006