Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,677,941 – 21,678,033 |
Length | 92 |
Max. P | 0.637496 |
Location | 21,677,941 – 21,678,033 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -21.82 |
Energy contribution | -23.07 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.64 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.637496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21677941 92 + 23771897 GUGACAUUCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCCCUCCGGGGCGGAUAACAGCCGCCUGGAC .......(((..........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.10) >DroSec_CAF1 21618 92 + 1 GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCGCUCCGGGGCGGAUAACAGCCGCCUGGAC ......(((...........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.20) >DroSim_CAF1 16234 92 + 1 GUGACAUCCCCCUCUUUAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGGAUCCGCUCCGGGGCGGAUAACAGCCGCCUGGAC ......(((...........(((((.(((((((--.....)))))))))))).---------....(((((.....)))))(((((.......))))).))). ( -35.20) >DroEre_CAF1 15097 92 + 1 GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA--CUAGUGGUGGUUUCCGGA---------ACCUCCGAAUCCCCUCCGGGCCGGAUAACUGCCGCCUGGAC ....................(((((.((((((.--(....)))))))))))).---------..............(((((((.((.......))))))))). ( -29.40) >DroYak_CAF1 13118 92 + 1 GUGACAUCACCCUCUUGAUCCCGGAUAACCGCA--CUAGUUGUGGUUUCCGGA---------ACCUCCGAAUCCCCUCCGGGACGGAUAACAGCCGCCUGGAC (((....)))..........(((((.(((((((--.....)))))))))))).---------..............((((((.(((.......))))))))). ( -31.80) >DroPer_CAF1 21446 92 + 1 GUCACAUCUGCCUCC-----------AAGCUCAAUCUGGUGGUGGUCUCCUGCUCGGGCUCGAGCUCGGGCUCGAGCUCAGGACGUAUAACAGCUGCCUGGAC (((....(..((.((-----------(.........))).))..)......(((((((((((....))))))))))).((((..((......))..))))))) ( -36.50) >consensus GUGACAUCCCCCUCUUGAUCCCGGAUAACCGCA__CUAGUUGUGGUUUCCGGA_________ACCUCCGGAUCCCCUCCGGGGCGGAUAACAGCCGCCUGGAC ....................(((((.((((((.........)))))))))))........................((((((.(((.......))))))))). (-21.82 = -23.07 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:34 2006