Locus 8252

Sequence ID 3L_DroMel_CAF1
Location 21,677,492 – 21,677,609
Length 117
Max. P 0.962897
window13496

overview

Window 6

Location 21,677,492 – 21,677,609
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -39.42
Consensus MFE -18.91
Energy contribution -19.67
Covariance contribution 0.75
Combinations/Pair 1.25
Mean z-score -2.38
Structure conservation index 0.48
SVM decision value 1.55
SVM RNA-class probability 0.962897
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21677492 117 - 23771897
CUACCAAACUGUUUGCCAUCGACGCCAGUUCGGCCGGAGUGGAGUCCCCACCACCGAACGUGGCCAUCUCCCUCUCCCAGGACAAUGAGAAUGCAACGCUAUCGAUUGCCGAGCAGC
........((((((((.(((((.((((((((((...(.((((.....))))).)))))).))))..((((....((....))....))))...........))))).).))))))). ( -38.40)
>DroVir_CAF1 13764 111 - 1
CAACAAAACUCUUUCCCAUCAAUGCGACAAUAUCCUCGCAGGACUCGUCUGAGCCCAAUGUGGCCAUCGCCCUGGCCACGGAC------AAUGCCACAAUUGCGAUUGCCGAACAGC
......................(((((........)))))((.(((....))).))...(((((((......)))))))((.(------(((((.......)).))))))....... ( -28.90)
>DroPse_CAF1 20807 117 - 1
CAACAAAACUGUUUGCCAUCGAGGGCACAUUCGCUGGCGGGGACGCACCCCAGCCGAAUGUGGCCGUAUCCCUGGCUCAGGACUCUGUGAACUCCACAGUUUCGAUUGCCGAACAGC
........((((((((.(((((((.((((((((((((.((.......)))))).)))))))).)).....((((...))))...(((((.....)))))..))))).).))))))). ( -48.40)
>DroEre_CAF1 14648 117 - 1
CUACCAAACUGUUUGCCAUCGAUGCCACUCCGGCCGGAGUGGAGUCCCCACCUCCGAACGUGGCCAUCUCCCUCUCCCUGGACAAUGAAAAUGCAACGCUUUCGGUUGCCGAGCAGC
........((((((((.(((((.((...(((((..((((.((((...((((........))))....))))))))..)))))..((....)).....))..))))).).))))))). ( -36.10)
>DroYak_CAF1 12669 117 - 1
CAACCAAACUGUUUGCAAUCGAUGCCACUCCUGCCGGAGUGGAAUCCCCACCACCGAACCUGGCCAUCUCCCUCUCCCAGGACAAUGAAAAUGCAACUCUUUCGAUUGCCGAGCAGC
........((((((((((((((..(((((((....)))))))................(((((.............)))))....................))))))).))))))). ( -36.32)
>DroPer_CAF1 20991 117 - 1
CAACAAAACUGUUUGCCAUCGAGGGCACAUUCGCUGGCGGGGACGCACCCCAGCCGAAUGUGGCCGUAUCCCUGGCUCAGGACUCUGUGAACUCCACAGUUUCGAUUGCCGAACAGC
........((((((((.(((((((.((((((((((((.((.......)))))).)))))))).)).....((((...))))...(((((.....)))))..))))).).))))))). ( -48.40)
>consensus
CAACAAAACUGUUUGCCAUCGAUGCCACAUCCGCCGGAGUGGACUCCCCACAGCCGAACGUGGCCAUCUCCCUCGCCCAGGACAAUGAGAAUGCAACACUUUCGAUUGCCGAACAGC
........((((((((.(((((.(((((......(((.((((.....))))..)))...)))))......(((.....)))....................))))).).))))))). (-18.91 = -19.67 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:33 2006