Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,676,612 – 21,676,702 |
Length | 90 |
Max. P | 0.612514 |
Location | 21,676,612 – 21,676,702 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -18.54 |
Energy contribution | -17.93 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.16 |
Mean z-score | -1.25 |
Structure conservation index | 0.77 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21676612 90 + 23771897 ACCCGACAUCUCGGCAUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA ........((.(((.((.(((((((((((((..........))))))))))(((..((((((....)))))).))).))).))))))).. ( -25.30) >DroPse_CAF1 19912 75 + 1 ---------------CUCCAAGCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAGCCGUGAAACGUGCGUGGCAUGCGAAAG ---------------..(((.((((((((((..........))))))))))(((..((((((....)))))).))).))).......... ( -20.20) >DroEre_CAF1 13834 90 + 1 UCCGGACUUCCCGCCAUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA ((((((......(((((....((((((((((..........))))))))))(((..((((((....)))))).)))))))).)))))).. ( -32.10) >DroYak_CAF1 11844 82 + 1 UCCGGG--------CAUCCCGACAUCCGUAUUAAGUUUGACGUGCGGAUGUGCGAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGGAAA ((((((--------....((.((((((((((..........))))))))))(((..((((((....))))))...)))))..)))))).. ( -28.30) >DroAna_CAF1 10846 69 + 1 ---------------------GCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUGCGAAAA ---------------------((((((((((..........))))))))))((...((((((....))))))((((...))))))..... ( -18.90) >DroPer_CAF1 20072 75 + 1 ---------------CUCCAAGCAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAGCCGUGAAACGUGCGUGGCAUGCGAAAG ---------------..(((.((((((((((..........))))))))))(((..((((((....)))))).))).))).......... ( -20.20) >consensus _______________AUCCCGACAUCCGUAUUAAAUUUGACGUGCGGAUGUGCAAAGUUUUAACCGUGGAACGUGCGUGGCAUCCGAAAA .....................((((((((((..........))))))))))(((..((((((....)))))).))).............. (-18.54 = -17.93 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:32 2006