Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,675,759 – 21,675,855 |
Length | 96 |
Max. P | 0.865960 |
Location | 21,675,759 – 21,675,855 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 75.05 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -17.35 |
Energy contribution | -17.77 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.29 |
Mean z-score | -1.49 |
Structure conservation index | 0.65 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21675759 96 + 23771897 AACUGGGGCUCCGUGGACACGUCCACAGCUCUCCCAGCUACCCUCGCUGUGGAAUCCCGUACGGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCA ....((((((..(((((....)))))((((((((((((.......)))).)))..(((....)))..)))))........)))))).......... ( -35.10) >DroSec_CAF1 19400 96 + 1 AACUGGGUCUCCGUGGACACAACCUCAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCG ....((....))(((((....(((..........((((.......)))).(((((...)))))))).(((((((....)))))))....))))).. ( -23.90) >DroSim_CAF1 14024 96 + 1 AACUGGGUCUCCGUGGACACUACCACAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUACACCG ....(((..(((((((......))))........((((.......)))).)))..)))....((((.(((((((....))))))).......)))) ( -27.20) >DroEre_CAF1 13003 87 + 1 AACUGGGACUCCGUAGACACUACCACAGCUCCUCCAU---------CUGUGGAAUCCCGUUCCAGUCGGGCUUUUAUAAAGGCGCCUUACCCACCA .((((((((...((....))..((((((.........---------))))))......)))))))).(((((((....))))).)).......... ( -23.40) >DroYak_CAF1 11013 87 + 1 AAUGGGGAUUCCGUGGACAUUACCACAGCGCCCCCAG---------CUGCGGAAUCCCGUUCCAGUCGAGCAUUUAUGAAUGCCCCUUAUCCACCA ....((((((((((((......)))).((((.....)---------).))))))))))...........(((((....)))))............. ( -27.20) >DroAna_CAF1 10009 93 + 1 ACAUGGGACUCACUGGACACUACCACU---ACCUUGGCUCCCCCUCCCGCUGAGGCACGUGCCGGUCGUGCCUUUGAAAAAGCACCCUAUCCUCCA ..(((((....(((((.(((.......---.(((..((..........))..)))...)))))))).((((..((....)))))))))))...... ( -22.80) >consensus AACUGGGACUCCGUGGACACUACCACAGCUCCCCCAGCUCCCCCCGCUGUGGAAUCCCGUUCCGGUCGGGCUUUUGUAAAAGCUCCUUAUCCACCA ....(((..(((((((......))))........((((.......)))).)))..))).........(((((((....)))))))........... (-17.35 = -17.77 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:31 2006