Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,512,269 – 2,512,376 |
Length | 107 |
Max. P | 0.658375 |
Location | 2,512,269 – 2,512,376 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -26.21 |
Consensus MFE | -19.24 |
Energy contribution | -19.12 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.86 |
Structure conservation index | 0.73 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2512269 107 + 23771897 AAAAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCAAAGAUAAGAAGGGGAAUCCCCGGGAAGAAAGGCAGUUGCAAUGCGUACGCUGGCUGGGUGAUAUAGAAA ...(((....)))....................((((...........((((...))))........((.(((((((.....))).)))).)))))).......... ( -23.30) >DroSec_CAF1 135221 106 + 1 A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUAGGCUGGCUGGGUGAUAUAGAAA .-.(((....)))....................((((...........((((...))))........((.(((((((.....))).)))).)))))).......... ( -26.00) >DroSim_CAF1 130708 106 + 1 A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUGGGCUGGCUGGGUGAUAUAGAAA .-.(((....)))..(((((......((((....((((((.((.....((((...))))..........((....)).)).)))))).))))....)))))...... ( -30.80) >DroEre_CAF1 136007 103 + 1 AAAAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGGAGGGGAAUCUCCGGCAAGAAAGGCAGCUGCAUCGUGUGGG----CUGGAUGAUAUAGUAA ...(((....)))(((((.........(((....(((((((((..(((((....)))))..........((....))))).))))))----.))).....))))).. ( -26.04) >DroYak_CAF1 134432 102 + 1 A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACGCACAGAUAAGAAGGGGAAUCCCCGGGAAGAAAGGCAGCUGCAGUGUGUGGA----GUGAAUGAUAUAGAAA .-.(((....)))((((((....(((((.......)))))........((((...)))).........)))))).....(((((.(.----.....).))))).... ( -24.90) >consensus A_AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUGGGCUGGCUGGGUGAUAUAGAAA ...(((....)))((((((....((((.........))))........((((...)))).........))))))................................. (-19.24 = -19.12 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:06 2006