Locus 825

Sequence ID 3L_DroMel_CAF1
Location 2,512,269 – 2,512,376
Length 107
Max. P 0.658375
window1268

overview

Window 8

Location 2,512,269 – 2,512,376
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 90.12
Mean single sequence MFE -26.21
Consensus MFE -19.24
Energy contribution -19.12
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.86
Structure conservation index 0.73
SVM decision value 0.26
SVM RNA-class probability 0.658375
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2512269 107 + 23771897
AAAAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCAAAGAUAAGAAGGGGAAUCCCCGGGAAGAAAGGCAGUUGCAAUGCGUACGCUGGCUGGGUGAUAUAGAAA
...(((....)))....................((((...........((((...))))........((.(((((((.....))).)))).)))))).......... ( -23.30)
>DroSec_CAF1 135221 106 + 1
A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUAGGCUGGCUGGGUGAUAUAGAAA
.-.(((....)))....................((((...........((((...))))........((.(((((((.....))).)))).)))))).......... ( -26.00)
>DroSim_CAF1 130708 106 + 1
A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUGGGCUGGCUGGGUGAUAUAGAAA
.-.(((....)))..(((((......((((....((((((.((.....((((...))))..........((....)).)).)))))).))))....)))))...... ( -30.80)
>DroEre_CAF1 136007 103 + 1
AAAAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGGAGGGGAAUCUCCGGCAAGAAAGGCAGCUGCAUCGUGUGGG----CUGGAUGAUAUAGUAA
...(((....)))(((((.........(((....(((((((((..(((((....)))))..........((....))))).))))))----.))).....))))).. ( -26.04)
>DroYak_CAF1 134432 102 + 1
A-AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACGCACAGAUAAGAAGGGGAAUCCCCGGGAAGAAAGGCAGCUGCAGUGUGUGGA----GUGAAUGAUAUAGAAA
.-.(((....)))((((((....(((((.......)))))........((((...)))).........)))))).....(((((.(.----.....).))))).... ( -24.90)
>consensus
A_AAACGGAAGUUGCUGUCAAAAUGUGCCAAAAACCCACAGAUAAGAAGGGGAAUCCCCGGAAAGAAAGGCAGCUGCAGUGUGUGGGCUGGCUGGGUGAUAUAGAAA
...(((....)))((((((....((((.........))))........((((...)))).........))))))................................. (-19.24 = -19.12 +  -0.12) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:06 2006