Locus 8246

Sequence ID 3L_DroMel_CAF1
Location 21,659,724 – 21,659,837
Length 113
Max. P 0.581264
window13486

overview

Window 6

Location 21,659,724 – 21,659,837
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 69.34
Mean single sequence MFE -22.32
Consensus MFE -13.91
Energy contribution -13.17
Covariance contribution -0.75
Combinations/Pair 1.39
Mean z-score -1.10
Structure conservation index 0.62
SVM decision value 0.10
SVM RNA-class probability 0.581264
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21659724 113 - 23771897
UC--UUAACCAUUGGUGUUCCUAAUAUAUAUUAUCAUU---U--AUAUUGCAGCUGCAACAGCACAUGGUUUCUCACCACAAGACGAGUAUCCAGCAGUUCAACUGCACUAAGUGCUCGG
..--........(((((..(((((((((..........---)--))))))..((((...))))....)).....))))).....(((((((...((((.....)))).....))))))). ( -26.20)
>DroVir_CAF1 22232 99 - 1
---------------------UAAUAUUUCUCAUUUCCUUCCCCGUGCAACAGCUGCAGCAGCACAUGGUAUCUCAUCACAAGACGAGUAUACAGCAAUUUAAUUGCACCAAAUGCUCGG
---------------------.....................(((.(((...((((...))))...((((..(((.((....)).)))......(((((...)))))))))..))).))) ( -21.30)
>DroEre_CAF1 36016 113 - 1
UC--AUAACCGUAGGUGUUUCUAAUAUAUAUUAUUAUG---U--AUAUUGCAGCUGCAACAGCACAUGGUUUCUCACCACAAGACGAGUAUCCAGCAGUUCAACUGUACCAAGUGCUCGG
..--....((((((.(((....(((((((((....)))---)--)))))))).))))...(((((.(((...(((..........)))...)))((((.....)))).....))))).)) ( -29.60)
>DroYak_CAF1 45033 115 - 1
UUUAGCAACCGUAAGUGUUACCAAUAUAUAUUAUUAUC---U--AUAUUGCAGCUUCAACAGCACAUGGUUUCUCACCACAAGACGAGUAUCCAGCAGUUCAACUGCACAAAGUGUUCGG
...(((((((....).)))..(((((((.((....)).---)--))))))..)))....((((((.(((...(((..........)))...)))((((.....)))).....))))).). ( -22.90)
>DroMoj_CAF1 24888 92 - 1
---------------------UGAUAGCUCUGAUUGUC---C----ACGAUAGCUCCAGCAGCAUAUGGUGUCCCACCACAAGAUGAGCAUCCAGCAAUUCAACUGCACCAAGUGCUCGG
---------------------.....((((((.(((((---.----..)))))...))).)))...(((((...))))).....(((((((...(((.......))).....))))))). ( -20.30)
>DroAna_CAF1 35704 91 - 1
---------------------UAAUGUAUUUU---GUU---U--CCAUUACAGCUUCAGCAACACAUGGUUUCGCAUCAUAAGACCAGUAUUCAGCAAUUCAAUUGCACCAAGUGCUCGG
---------------------....((((((.---((.---.--....(((.((....))......((((((.........)))))))))....(((((...))))))).)))))).... ( -13.60)
>consensus
_____________________UAAUAUAUAUUAUUAUC___U__AUAUUACAGCUGCAACAGCACAUGGUUUCUCACCACAAGACGAGUAUCCAGCAAUUCAACUGCACCAAGUGCUCGG
....................................................(((.....)))...((((.....)))).....(((((((...((((.....)))).....))))))). (-13.91 = -13.17 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:24 2006