| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,652,775 – 21,652,870 |
| Length | 95 |
| Max. P | 0.570113 |
| Location | 21,652,775 – 21,652,870 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -28.44 |
| Energy contribution | -28.88 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21652775 95 - 23771897 UUGAGUGCCUCCAGGGGCACUUGGAGUCGGUCCGAAUUUUUGUCUCUGUCCCAGAGAUUGGAGUUGAAAUA----------ACGCGAGAUGCUGUAUUGGCGCCU ..((((((((....))))))))((.((((((.(((((((..(((((((...)))))))..)))))......----------.(....)....)).)))))).)). ( -32.40) >DroSec_CAF1 29796 95 - 1 UUGAGUGCCUCCAGGGGCACUUGGAGUCGGUCCGAAUUUUAGUCUCUGUCUCAGAGAUUGGAGUUGAAAUA----------GCGCGGGAUGCUGUAUUGGCGCCU (..(((((((....)))))))..)....((((((((((((((((((((...))))))))))))))...(((----------(((.....))))))..))).))). ( -38.10) >DroSim_CAF1 34232 95 - 1 UUGAGUGCCUCCAGGGGCACUUGGAGUCGGUCCGAAUUUUUGUCUCUGUCUCAGAGAUUGGAGUUGAAAUA----------GCGCGGGAUGCUGUAUUGGCGCCU (..(((((((....)))))))..)....(((((((((((..(((((((...)))))))..)))))...(((----------(((.....))))))..))).))). ( -35.10) >DroEre_CAF1 29069 95 - 1 UUGAGUGCCUCCAGGGGCACUUGGAGUCAGUCCGAAUUUUUGUCUCUGUCCCAGAGAUUGGAGUUGAAAUA----------GCGCAGGAUGCUGUAUUGGCGCCU ..((((((((....))))))))((.((((((...(((((..(((((((...)))))))..)))))...(((----------(((.....)))))))))))).)). ( -35.90) >DroYak_CAF1 38352 95 - 1 UUGAGUGCCUCCAGGGGCACUUGGAGUCGGUCCGAAUUUUUGUCUCUGUCCCAGAAAUUGGAGUUGAAAUG----------GCGCAGGAUGCUGUAUUGGCGCCU (..(((((((....)))))))..)..(((((((.((((((((.........))))))))))).))))...(----------((((..((((...)))).))))). ( -32.60) >DroAna_CAF1 26856 105 - 1 AGGAGAGCCUUAAGGGGCACUUGGAGUCGCUAUGAAUUUUUGUCUCUGUCCCGAGGAUUUGAGUGGAAAUCGUAUAGACCAUCGCUGAAUGCUGUCUUGGCGCCU (((...(((..((((((((.(..(.(((..(((((.(((..(.(((.((((...))))..))))..))))))))..))).....)..).)))).))))))).))) ( -28.20) >consensus UUGAGUGCCUCCAGGGGCACUUGGAGUCGGUCCGAAUUUUUGUCUCUGUCCCAGAGAUUGGAGUUGAAAUA__________GCGCGGGAUGCUGUAUUGGCGCCU ..((((((((....))))))))((.((((((.(((((((..(((((((...)))))))..)))))..................((.....)))).)))))).)). (-28.44 = -28.88 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:16 2006