Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,647,110 – 21,647,209 |
Length | 99 |
Max. P | 0.850075 |
Location | 21,647,110 – 21,647,209 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 71.70 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -14.30 |
Energy contribution | -17.14 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.24 |
Mean z-score | -1.92 |
Structure conservation index | 0.45 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.850075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21647110 99 - 23771897 --------CUUU---UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAGCUAUGCUGGGACCCAAACUCGGUUGGCAUCCUUAUUCC --------....---((((.((((((((((.(((.((((.....)))).))).)))...))))))).))))((((.((((((.......))))))))))........... ( -35.10) >DroSec_CAF1 23670 99 - 1 --------CUUU---UUGGGCCAAGACAGUGUCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAGCUAUGGUGGUUGCCAAGCUCGGUUGGCAUCCUUAUUUC --------...(---((((.((((((((((..((.((((.....)))).))..)))...))))))).))))).......((.((((((......)))))).))....... ( -33.20) >DroSim_CAF1 24940 99 - 1 --------CUUU---UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAUGCUAUGGUGGGAGCCAAGCUCGGUUGGCAUCCUUAUUCC --------....---.(((.((((((((((.(((.((((.....)))).))).)))...))))))).)))......((.(((((((((......))))).))))....)) ( -35.30) >DroEre_CAF1 22702 99 - 1 --------UUUU---UUGGGCCACAACAGUGCGAAUUGCAGCUCGGAGCUGCAACAAAAGUCUUGGGCUAAAAUAAGCUGAGAGCCCAGCUCCAUUGGUAUCCCUAUUCC --------....---..(((......(((((.((.(((((((.....)))))))........(((((((.............))))))).)))))))....)))...... ( -28.42) >DroYak_CAF1 31917 82 - 1 --------UUCU---UUGGGCCAAGACUA---G-------ACUCG-------UACUCAAGUCUUGGACUAAAAUAUGCUGGGAGUCAAGCUCCGUUGGCAUCCUUAUUCC --------...(---((((.((((((((.---(-------(....-------...)).)))))))).)))))..(((((.((((.....))))...)))))......... ( -25.10) >DroAna_CAF1 21410 105 - 1 GUUUUCGUUUUUUGUCUGGGCCAAGACUGUGCCAAUUGCCAGUUGGAU---GGGCUAAAGUG--AAGCUAGAAUCUGCUGUGAGCCCAACUCCGCUGGCAUCCUACUUCU ..................(((((....)).)))...(((((((.((((---(((((......--.(((........)))...))))))..)))))))))).......... ( -32.60) >consensus ________CUUU___UUGGGCCAAGACAGUGCCAAUUGCAGCUUGCAGCUGGAACUAAAGUCUUGGGCUAAAAUAUGCUGGGAGCCAAGCUCCGUUGGCAUCCUUAUUCC ...............((((.(((((((........((.((((.....)))).)).....))))))).))))........(((.(((((......))))).)))....... (-14.30 = -17.14 + 2.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:13 2006