| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,510,838 – 2,510,935 |
| Length | 97 |
| Max. P | 0.516066 |
| Location | 2,510,838 – 2,510,935 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -24.92 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.66 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2510838 97 + 23771897 UCCAAAUACACGAAUGUAUAUAUAUAAAUACAUCUCUGAAUUGGACCUUUGGGGAUCUUUACUGGGGAGAUGGAGCAGACAUGCGACACAUAUG--UAC ...............((((((((.......(((((((.....(((((.....)).))).......)))))))..(((....))).....)))))--))) ( -20.20) >DroSec_CAF1 133916 91 + 1 UCCAAAUACACGUAUGUAUAUG------UACAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUACA--UAU ..........(((((((...((------(.(((((((..((((((((.....))...))))))..)))))))..))).))))))).........--... ( -25.50) >DroSim_CAF1 129314 91 + 1 UCCAAAUACACGUAUGUGUAUA------UACAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUACC--UAU ...........((((((((...------..(((((((..((((((((.....))...))))))..)))))))..(((....))).)))))))).--... ( -26.70) >DroEre_CAF1 134531 93 + 1 UCCAAAUACACGAAUGUAUAUG------UACAUCUCUGAAUUGGACCUUUGGGAAUCUUUAGUGGCGAGAUGGAGCAGACAUGCGACAUACUUAUAUAU .............(((((((.(------((((((((...((((((((....))....))))))...))))))..(((....)))....))).))))))) ( -18.50) >DroYak_CAF1 132961 93 + 1 UCCAAAUACGCGUAUGUAUAUG------UACAUCUCUUCAUUGGACCCUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACAUAUUUAUAUGU ...(((((.((((((((...((------(.((((((((((((((((((...)))...)))))))))))))))..))).))))))).).)))))...... ( -33.70) >consensus UCCAAAUACACGUAUGUAUAUG______UACAUCUCUGAAUUGGACCUUUGGGGAUCUUUAGUGGGGAGAUGGAGCAGACAUGCGACACAUAUA__UAU ...........((((((.............(((((((..((((((((....))....))))))..)))))))..(((....)))...))))))...... (-17.30 = -17.66 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:05 2006