| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,646,031 – 21,646,122 |
| Length | 91 |
| Max. P | 0.519340 |
| Location | 21,646,031 – 21,646,122 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.02 |
| Mean single sequence MFE | -27.57 |
| Consensus MFE | -22.37 |
| Energy contribution | -22.82 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21646031 91 + 23771897 CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGGAAAAUCUGAGGGACAUGGCGGGAAUGGACACAACGAACGGAAUUCCUUUUCCUAC--------U ......((((((((((......))))))))))(((((((......(..(((.......)))..).........((....)))))))))..--------. ( -28.30) >DroSec_CAF1 22635 91 + 1 CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGAAAAAUCUGAGGAACAUGGCGGGAAUGGACACAACGAAAGGAAUUCCUUUUCCUAC--------U ..((((((((((((((......))))))))))(((....)))......))))..(((((.(((.....(....)....))).)))))...--------. ( -29.30) >DroSim_CAF1 23879 91 + 1 CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGGAAAAUCUGAGGAACAUGGCGGGAAUGGACACAACGAAAGGAAUUCCUUUUCCUAC--------U ......((((((((((......))))))))))(((((.....(((((((((.......))).......(....)...)))))))))))..--------. ( -29.20) >DroEre_CAF1 21497 90 + 1 CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGGAAAAUCUGAGGAACAUGGCGGGAAUGGACACAACGAAAGGAAUUCCUUUUCCUAC--------- ......((((((((((......))))))))))(((((.....(((((((((.......))).......(....)...)))))))))))..--------- ( -29.20) >DroYak_CAF1 30838 90 + 1 CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGAAAAAUCUGAGGAACAUGGCGGGAAUGGACACAACGAAAGGAAUUCCUUUUCCUAC--------- ..((((((((((((((......))))))))))(((....)))......))))..(((((.(((.....(....)....))).)))))...--------- ( -29.30) >DroPer_CAF1 10534 93 + 1 CGUAUGGCACAACGCCCCCGAAGGUGUUCUAUAGGAAAAUCUCAAGAGCAU--CGAGAAUGAA---AGAGUCAAGAAUUCCUUUUUAUUCGAUUUUCU- ..(((((...((((((......)))))))))))((((((((....(.....--)..(((((((---(((((.....))))..))))))))))))))))- ( -20.10) >consensus CAUAUGGCACAACGCCCCCGAAGGUGUUGUGCGGGAAAAUCUGAGGAACAUGGCGGGAAUGGACACAACGAAAGGAAUUCCUUUUCCUAC_________ ..((((((((((((((......)))))))))).......((....)).))))..(((((.(((.....(....)....))).)))))............ (-22.37 = -22.82 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:12 2006