| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,637,758 – 21,637,850 |
| Length | 92 |
| Max. P | 0.959236 |
| Location | 21,637,758 – 21,637,850 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.64 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -14.14 |
| Energy contribution | -15.47 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21637758 92 + 23771897 A-----AUGCAAAACCAAUGCAAAUGAAAAUAAUGACAGGGCGCGG-UUUGCGAAGCUGUCUAAUUA--UUUAUUUGACAUUGGCA-AUGAC-------------AAUGAAACC----- .-----.((((...((((((((((((((......(((((..(((..-...)))...)))))......--)))))))).))))))..-.)).)-------------)........----- ( -25.20) >DroSec_CAF1 14452 92 + 1 A-----AUGCAAAACCAAUGCAAAUGAAAAUAAUGACAGGGCGCGG-UUCGCGAAACUAUCUAAUUA--UUUGUUUGACAUUGGCA-AUGAC-------------AAUGAAACC----- .-----.((((...((((((((((..((......((.((..((((.-..))))...)).))......--))..)))).))))))..-.)).)-------------)........----- ( -20.60) >DroSim_CAF1 14613 92 + 1 A-----AUGCAAAACCAAUGGAAAUGAAAAUAAUGACAGGGCGCGG-UUCGCGAAACUAUCUAAUUA--UUUGUUUGACAUUGGCA-AUGAC-------------AAUGAAACC----- .-----.((((...((((((..((...(((((((((.((..((((.-..))))...)).))..))))--)))..))..))))))..-.)).)-------------)........----- ( -19.20) >DroEre_CAF1 13060 91 + 1 A-----AUGCAAAACCAAUGCGAAUGAAAAUAAUAACAGGGCGCGG-UUCGUGAAACUGUCUAAUUA--U-UAUUUGACAUUGGCA-AUGAC-------------AUCGAAGCC----- .-----(((((...(((((((((((((.(((....((((..((((.-..))))...))))...))).--)-)))))).))))))..-.)).)-------------)).......----- ( -21.30) >DroYak_CAF1 23593 97 + 1 AACCUAAUGCAAAACCAAUGCAAAUGAAAAUAAUGACAGGGCGCGG-UUCGUGAAAUUGUCUAAUUA--UUUAUUUGGCAUUGGCA-AUGAC-------------AAUGAAACC----- .......((((...((((((((((((((......(((((..((((.-..))))...)))))......--))))))).)))))))..-.)).)-------------)........----- ( -23.40) >DroAna_CAF1 12715 114 + 1 A-----AUGCAUAGUCAAUGGAGAAGUAAAUAAUAAUGAGGGGCGGGCUUAUGGAAUGGAAUUAAUAAAAUUAGAUGGUAUUUGGAAAGGAUAUCUUUAUAAAAUAAAAAAACCAUACC .-----..((...(((.........................)))..))....((.((((............((((.(((((((.....))))))))))).............)))).)) ( -10.92) >consensus A_____AUGCAAAACCAAUGCAAAUGAAAAUAAUGACAGGGCGCGG_UUCGCGAAACUGUCUAAUUA__UUUAUUUGACAUUGGCA_AUGAC_____________AAUGAAACC_____ ..............((((((((((((((......(((((..((((....))))...)))))........)))))))).))))))................................... (-14.14 = -15.47 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:07 2006