| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,637,329 – 21,637,421 |
| Length | 92 |
| Max. P | 0.893405 |
| Location | 21,637,329 – 21,637,421 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -25.42 |
| Consensus MFE | -15.65 |
| Energy contribution | -16.40 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21637329 92 + 23771897 ---UGUGAAAUUCCA-CUAAUAAUUUUUCAGCGGUGUUGAUGGCUUUAUUGACAUCGCCAGAAAUGAUUCGAGCU--------------------GUAGCAGCGAAAAUUUAAUCA- ---.(((......))-)...(((.(((((.(((((((..(((....)))..)))))))((....))......(((--------------------(...))))))))).)))....- ( -23.50) >DroSec_CAF1 14023 92 + 1 ---UGUGAAAUUCCA-CUAAUAAGUUUUCAGCGGUGUUGAUGGCUUUAUUGGCAUCGCUAGAAAUGAUUUAAGCC--------------------GCAGCAGCGAAAACUUAAUCA- ---.(((......))-)...(((((((((((((((((..(((....)))..))))))))................--------------------((....)))))))))))....- ( -27.80) >DroSim_CAF1 14184 92 + 1 ---UGUGAAAUUCCA-CUAAUAAGUUUUCAGCGGUGUUGAUGGCUUUAUUGGCAUCGCCAGAAAUGAUUUAAGCC--------------------GCAGCAGCGAAAACUUAAUCA- ---.(((......))-)...(((((((((.((..(((((.((((((..(((((...))))).........)))))--------------------)))))))))))))))))....- ( -27.00) >DroEre_CAF1 12637 92 + 1 ---UGUGAAAUUUCA-CGAAUAAGUUUUCAGCGCUGUUGAUGGCUUUAUUUGCAUCGCCAGAAAUGAUUUAAGCC--------------------GCUUCAGCGAAAACUUAAUCA- ---.((((....)))-)((.(((((((((...((((..(.((((((...(((..((....))..)))...)))))--------------------))..))))))))))))).)).- ( -26.50) >DroYak_CAF1 23173 92 + 1 ---CGUGAAAUUUCA-CGAAUAAGUUUUCAGUGGUGUUGAUAGGUUUAUUUGCAUCGGCAGAAAUGAUUUAAGCC--------------------GCAGCAGCGAAAUCUUAAUCA- ---.((((....)))-)((.((((.((((...(.(((((...(((((((((((....))))).......))))))--------------------.))))).))))).)))).)).- ( -24.41) >DroAna_CAF1 12184 116 + 1 AGAUGUGAAAUUCCAAAUAAUAAAUUUU-AUCCGUGUUGAUGGCUUUAUUUGCAUCAUCAGAAACGAUUUGAGCCAAGUAGCAGUAGCCAAAGCAGCCGCUGCAAAAAUCUAAUCAA .((((..((.......((((......))-))((((....)))).....))..)))).........((((.((.....(((((.((.((....)).)).))))).....)).)))).. ( -23.30) >consensus ___UGUGAAAUUCCA_CUAAUAAGUUUUCAGCGGUGUUGAUGGCUUUAUUGGCAUCGCCAGAAAUGAUUUAAGCC____________________GCAGCAGCGAAAACUUAAUCA_ ....................(((((((((.(((((((..(((....)))..))))))).....................................((....)))))))))))..... (-15.65 = -16.40 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:05 2006