Locus 8233

Sequence ID 3L_DroMel_CAF1
Location 21,635,495 – 21,635,610
Length 115
Max. P 0.781633
window13465

overview

Window 5

Location 21,635,495 – 21,635,610
Length 115
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -24.46
Consensus MFE -15.59
Energy contribution -18.90
Covariance contribution 3.31
Combinations/Pair 1.19
Mean z-score -1.94
Structure conservation index 0.64
SVM decision value 0.56
SVM RNA-class probability 0.781633
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21635495 115 + 23771897
CCUAUUUAAAAAAUCAGAUCCUUGUU---UUCUGCAUUUGUUCAAAUGCCCAUGCAGAGGCCUAGGUAUGUAAUCGUUAUAUUUCCUGGCUCAGCCAAUGGUUUCUCAACUUGCACAU
..........((((((..........---.(((((((..((......))..)))))))((((((((.(((((.....)))))..)))))....)))..)))))).............. ( -23.20)
>DroSec_CAF1 12213 115 + 1
CUUAUUUAAAAAAUCAGUUCUUUGUU---UUCUGCAUUUGUUCAAAUGCCCAUGCAGAGGCCUAGGCAUGUAAUCGUUUUAUUUCCUGCCUGGGCCCAUGGUUUUUCAACUUGCACAU
........((((((((..........---.(((((((..((......))..)))))))((((((((((.((((.....))))....))))))))))..))))))))............ ( -34.10)
>DroSim_CAF1 12369 115 + 1
CUUAUUUAAAAAAUCAGUUCUUUGUU---UUCUGCAUUUGUUCAAAUGCCCAUGCAGAGGCCUAGGUAUUUAAUCGUUUUAUUUCCUGCCUGGGCCCAUGGUUUUUCAACUUGCACAU
........((((((((..........---.(((((((..((......))..)))))))((((((((((...(((......)))...))))))))))..))))))))............ ( -30.90)
>DroYak_CAF1 21349 113 + 1
CUUAUUUAAAAAUGCAGUUCCUAUUUUUGUUCGCCAUUUUUACAAAUGCCCAUGCAGAG-CCUA--UGUAUAAACGUUUUGUUUUCCAUCCGAUACAAUAGAUU--CAAUGAUCCAAU
............((((.........(((((...........)))))......))))((.-.(((--(((((...((...((.....))..)))))).))))..)--)........... (  -9.66)
>consensus
CUUAUUUAAAAAAUCAGUUCCUUGUU___UUCUGCAUUUGUUCAAAUGCCCAUGCAGAGGCCUAGGUAUGUAAUCGUUUUAUUUCCUGCCUGAGCCAAUGGUUUUUCAACUUGCACAU
........((((((((..............(((((((..((......))..)))))))((((((((((.((((.....))))....))))))))))..))))))))............ (-15.59 = -18.90 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:04 2006