| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,635,236 – 21,635,346 |
| Length | 110 |
| Max. P | 0.507553 |
| Location | 21,635,236 – 21,635,346 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 68.66 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -9.51 |
| Energy contribution | -13.73 |
| Covariance contribution | 4.23 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.72 |
| Structure conservation index | 0.32 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21635236 110 + 23771897 UUUGGAGCAC----AUUUAUGAUUUAAAAUCAUGAAAGUUCUAUAGGACGUUAACUUAUUAAUACAUUUCAGUUCAUUAA---ACUGAUUGAAA--UGAAAGUGCUCCAAAUUACUUUG ((((((((((----.((((((((.....)))))))).((((....))))...............(((((((((.((....---..)))))))))--))...))))))))))........ ( -33.30) >DroSim_CAF1 12103 113 + 1 UUUGGAGCAU----UUUUAUGAUUUAAGGUCAUGAAAGUUCUUUAGGACGUUUACUUAUUAAUACAUUUCAGUUCAUUAAGCAACUGAUUGAAA--UGAAAGUGCUUCAAAUUACUGUG ((((((((((----(((((((((.....)))))))))((((....))))...............((((((((((..((....))..))))))))--))...))))))))))........ ( -28.10) >DroEre_CAF1 10775 100 + 1 UUUGGAUCAUAGAAGUUUAUGAUUUAAGGCCAUGAAAGUUCUUUAUGACUUUUAUGUAUAAGUGCGUCUGAGUUUAUGAAACAUCUGAUGGCCAAGUGGA------------------- .(((((((((((....)))))))))))((((((...((...((((((((((..(((((....)))))..))).)))))))....)).)))))).......------------------- ( -27.10) >consensus UUUGGAGCAU____AUUUAUGAUUUAAGGUCAUGAAAGUUCUUUAGGACGUUUACUUAUUAAUACAUUUCAGUUCAUUAA_CAACUGAUUGAAA__UGAAAGUGCU_CAAAUUACU_UG .(((((((((.....((((((((.....)))))))).((((....))))...................((((((........)))))).............)))))))))......... ( -9.51 = -13.73 + 4.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:03 2006