Locus 823

Sequence ID 3L_DroMel_CAF1
Location 2,507,364 – 2,507,460
Length 96
Max. P 0.564282
window1266

overview

Window 6

Location 2,507,364 – 2,507,460
Length 96
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 86.27
Mean single sequence MFE -34.88
Consensus MFE -23.74
Energy contribution -26.30
Covariance contribution 2.56
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.564282
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2507364 96 - 23771897
GUCUGUUCCGCCCGGAAGUGUUGACUCCGGCGGAGUUAAAGUUGCAGUAGCAGU------UGCAGUGUGAGUGCACGUGAAUACUCGCUUUGGUGGAGCUGA
.((.((((((((..((((((((((((((...))))))))(((..((((.(((.(------..(...)..).))))).))...))))))))))))))))).)) ( -34.70)
>DroSec_CAF1 130435 102 - 1
GUCUGUUCCGCCCGGAAGUGUUGACUCCGGCGGAGUUAAAGUUGCAGUAGCAGUUGCAGUUGCAGUGUGAGUGCACGUGAAUACUCGCUUUGGUGGAGCUGA
.((.((((((((..((((((((((((((...))))))))...(((((..((....))..)))))((((....)))).........)))))))))))))).)) ( -37.80)
>DroSim_CAF1 125848 102 - 1
GUCUGUUCCGCCCGGAAGUGUUGACUCCGGCGGAGUUAAAGUUGCAGUAGCAGUUGCAGUUGCAGUGUGAGUGCACGUGAAUACUCGCUUUGGUGCAGCUGA
.....(((((((.(((.((....))))))))))))....(((((((.(((((.(..((.......))..).)))..((((....))))..)).))))))).. ( -37.00)
>DroYak_CAF1 129439 91 - 1
GUCUGUUCCGCCCGGAAGUGUUGACUCCGGCGGAGUUCAAGUUAAACUUAAAGCUGGAGU-----------UGCACGUGAAUACUCGCUUUUGUGCAGCUGA
(.(((((((....))).((((.(((((((((.(((((.......)))))...))))))))-----------)))))((((....))))......)))))... ( -30.00)
>consensus
GUCUGUUCCGCCCGGAAGUGUUGACUCCGGCGGAGUUAAAGUUGCAGUAGCAGUUGCAGUUGCAGUGUGAGUGCACGUGAAUACUCGCUUUGGUGCAGCUGA
.....(((((((.(((.((....))))))))))))...............((((((((......((((....))))((((....)))).....)))))))). (-23.74 = -26.30 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:04 2006