Locus 8229

Sequence ID 3L_DroMel_CAF1
Location 21,629,472 – 21,629,577
Length 105
Max. P 0.655321
window13460

overview

Window 0

Location 21,629,472 – 21,629,577
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.17
Mean single sequence MFE -25.24
Consensus MFE -11.25
Energy contribution -12.31
Covariance contribution 1.06
Combinations/Pair 1.43
Mean z-score -1.74
Structure conservation index 0.45
SVM decision value 0.25
SVM RNA-class probability 0.655321
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21629472 105 - 23771897
ACCAUAACGCACGUUUUUUAUUGGGCGUCGUGA--AA-----------AAAUUGUGUAGCAAACCUCUGGGUAUAUUGCUAUACAAGUUUUUUUUUAACCCCUUAGGGUAAUGAAGGU--
(((...(((.((((((......)))))))))((--((-----------((.((((((((((((((....)))...))))))))))).))))))....((((....))))......)))-- ( -31.70)
>DroSec_CAF1 5918 103 - 1
ACCAUAACGCACAUUUUUUAUUGGGCGUCGUGA--AA-----------AAAUUGUGUAGCAAGCCUCUGGGUAUUUUGCUAUGCAAUUU--UUUUUAACCCCUUAGGGUAAUGAAGGU--
(((....(((.((........)).)))((((((--((-----------(((((((((((((((((....)))...))))))))))))))--))))..((((....)))).)))).)))-- ( -33.60)
>DroSim_CAF1 5958 103 - 1
ACCAUAACGCACAUUUUUUAUUGGGCGUCGUGA--AA-----------AAAUUGUGUAGCAAGCCUCUGGGUAUUUUGCUAUGCAAGUU--UUUUUAACCCCUUAGGGUACUGAAGGU--
(((...((((.((........)).))))..(((--((-----------(((((((((((((((((....)))...))))))))).))))--))))))((((....))))......)))-- ( -30.50)
>DroEre_CAF1 5035 117 - 1
ACCGUAACGCAUAUUUUUUUUUCGGCAUCAUGUGUAAGUUGUAAAUUUAAAUUGUGUAGCAAGCCUGUGGGUAUUUCGCUACACAAGUU---UUUUAACCCUUUGCGGUAAUAAAGCUAU
((((((((((((.................))))))..((((.(((......(((((((((..(((....))).....)))))))))..)---)).))))....))))))........... ( -25.73)
>DroYak_CAF1 15867 104 - 1
ACCAUCACACAUAUUUUUUAUUCGGCGUCGUGU--AA-----------AAAUUGUGUAGCAAACCUUUGGCUAUUUCGCUAUACAAGUU---UUUUAACCCUUUACGGUAAUGAAGGUCA
......(((((...(((((((.((....)).))--))-----------))).))))).....(((((((((......))).........---.....(((......)))...)))))).. ( -18.50)
>DroAna_CAF1 4476 89 - 1
AUGGGCACAGACGGU--------------UUAA--AA-----------AAAAUAUGUUUUAUACUUGAUGAAAUUUCUCUACUUUAACU--UUAUUAAGCUCUUGGGUUAAUGAAGGU--
.......((...(((--------------.(((--((-----------........))))).)))...)).................((--(((((((.(.....).)))))))))..-- ( -11.40)
>consensus
ACCAUAACGCACAUUUUUUAUUGGGCGUCGUGA__AA___________AAAUUGUGUAGCAAACCUCUGGGUAUUUCGCUAUACAAGUU__UUUUUAACCCCUUAGGGUAAUGAAGGU__
..(((.((((..............)))).)))...................(((((((((..(((....))).....)))))))))...........((((....))))........... (-11.25 = -12.31 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:59 2006