Locus 8226

Sequence ID 3L_DroMel_CAF1
Location 21,626,880 – 21,626,970
Length 90
Max. P 0.954760
window13453

overview

Window 3

Location 21,626,880 – 21,626,970
Length 90
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 73.59
Mean single sequence MFE -22.84
Consensus MFE -18.37
Energy contribution -17.89
Covariance contribution -0.48
Combinations/Pair 1.32
Mean z-score -1.21
Structure conservation index 0.80
SVM decision value 1.45
SVM RNA-class probability 0.954760
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21626880 90 + 23771897
CUU----------------UACAAUUGAGCUGAAAGCUCUUAACGCAAAUUCGAGCCAAGU-----------UAUUUCAUCCACAUGGUUUGCCCCUGCGUUCUUGAGUUAUUUCAG
...----------------..........((((((((((..((((((....(((((((.((-----------..........)).)))))))....))))))...))))..)))))) ( -23.40)
>DroSec_CAF1 3298 101 + 1
CUU----------------UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCGAGUUUUGGUCGAGAUAUUUAAUCCAGAUGGUUUGCCCCUGCGUUCUUGAGUUUUUUCAG
...----------------..........(((((.((((..((((((....(((((((...(((((..............))))))))))))....))))))...))))...))))) ( -25.94)
>DroSim_CAF1 3319 101 + 1
CUU----------------UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCGAGUUUUGGUCGAGAUAUUUAAUCCAGAUGGCUUGCCCCUGCGUUCUUGAGUUAUUUCAG
...----------------..........(((((.((((..((((((....(((((((...(((((..............))))))))))))....))))))...))))...))))) ( -28.34)
>DroEre_CAF1 2411 99 + 1
UCUAA----GCAUAUUUUGUACAAUUAAACUGAAUGCUCUUAACGCAAAUUCGAAUCAAGUUUUG-C-------------CGAGAUGGUUUACCCCUGCGUUCUUGAGUUAUUUCAG
.....----(((.....))).........(((((.((((..((((((.....((((((..((...-.-------------.))..)))))).....))))))...))))...))))) ( -18.60)
>DroYak_CAF1 13121 116 + 1
UUUAAUUUUGCAUAUUUUGUACAACUAUACUUAAUGCUCUUAGCGGAAAUUCGAACUAAGUUGUG-CAGAUAUAUUUAGCCCAUAUGGUUUACCCCUGCGUUCUUGAGCUAUUUCAG
(((((...((((...(((((((((((........(((.....)))(.....)......)))))))-)))).......((((.....))))......))))...)))))......... ( -17.90)
>consensus
CUU________________UACAAUUGAGCUGAAUGCUCUUAACGCAAAUUCGAGCCAAGUUUUG_C_GA_AUAUUUAAUCCAGAUGGUUUGCCCCUGCGUUCUUGAGUUAUUUCAG
.............................(((((.((((..((((((....(((((((...........................)))))))....))))))...))))...))))) (-18.37 = -17.89 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:51 2006