| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,626,074 – 21,626,170 |
| Length | 96 |
| Max. P | 0.937443 |
| Location | 21,626,074 – 21,626,170 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 94.17 |
| Mean single sequence MFE | -34.86 |
| Consensus MFE | -29.84 |
| Energy contribution | -29.28 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21626074 96 + 23771897 CCGCAUUGUUGAACUUAAUUAAUGUGGGGAUGGAGUGGAGGCGCUCCUUCCACCUCGCAUCCUCCUGGCGAACACGCCCUCAGCAUGCACUCGACU ..((((.(((((.............((((((((((((((((.....)))))).))).)))))))..((((....)))).)))))))))........ ( -37.00) >DroSec_CAF1 2511 96 + 1 UCGCAUUGUUGCACUUAAUUAAUGUGGGGAUGGGGUGGAGGCGCUCCUUCCACCUCGCAUCCUACUAGCGAACACGCCCUCAGCAUGCACUCGACG ..((((.((((............((((((.(((((((((((.....)))))))))))..))))))..(((....)))...))))))))........ ( -34.10) >DroSim_CAF1 2502 96 + 1 CCGCAUUGUUGCACUUAAUUAAUGUGGGGAUGGAGUGGAGGCGCUCCUUCCACCUCGCAUCCUCCUGGCGAACACGCCCUCAGCAUGCACUCGACG ..((((.((((..............((((((((((((((((.....)))))).))).)))))))..((((....))))..))))))))........ ( -34.70) >DroEre_CAF1 1677 96 + 1 CCGCAUUGUUGCACUUAAUUAAUGUGGGGAUGGAGUGGAGGUGCUCCGUCCACCGCGCGUCCUCCUGACGAACACGCCCUCGGCAUGCACUCGACG ..((((((((.............(((((((((((((......))))))))).)))).((((.....)))))))).(((...)))))))........ ( -34.30) >DroYak_CAF1 12346 96 + 1 CCGCAUUGUUGCACUUAAUUAAUGUGGGGAUGGAGUGGAGGUGCUCCUUCCAACUCGCAUCCUCCUGGCGAACACGCCCUCGGCAUGCACUCGACG ..((((.((((..............((((((((((((((((.....))))).)))).)))))))..((((....))))..))))))))........ ( -34.20) >consensus CCGCAUUGUUGCACUUAAUUAAUGUGGGGAUGGAGUGGAGGCGCUCCUUCCACCUCGCAUCCUCCUGGCGAACACGCCCUCAGCAUGCACUCGACG ((((((((...........))))))))(((.((((((....)))))).))).....((((.((...((((....))))...)).))))........ (-29.84 = -29.28 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:50 2006