Locus 8224

Sequence ID 3L_DroMel_CAF1
Location 21,625,831 – 21,625,943
Length 112
Max. P 0.519877
window13451

overview

Window 1

Location 21,625,831 – 21,625,943
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 89.46
Mean single sequence MFE -32.64
Consensus MFE -24.32
Energy contribution -26.68
Covariance contribution 2.36
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.519877
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21625831 112 + 23771897
GAUCUUUUGAUUGCCAUAAAGUGUGAUUGAAAGCACACCAAUGGCAUCCCUUUGCGGAUAAGUGAAGUUGCCCAGGCAUUUAUCUCAGUGCCUUCGGCUGGACAAGAGCUCC
((.((((((..((((((...(((((........)))))..))))))((((((..(......)..)))..(((.(((((((......)))))))..))).))))))))).)). ( -39.30)
>DroSec_CAF1 2268 112 + 1
GAUCAUUUGAUUGCCAUAAAGUGUGAUUGAAAGCACUUCAAUGGCAUCCCUUUGCGGAUAAGUGAAGUUGCCCAGGCAUUUAUCUCAGUGCCUUCGGCUGGACAAGAGCUCC
((.(.((((..((((((.((((((........))))))..))))))((((((..(......)..)))..(((.(((((((......)))))))..))).))))))).).)). ( -34.90)
>DroSim_CAF1 2259 112 + 1
GAUCUUUUGAUUGCCAUAAAGUGUGAUUGAAAGCACUCCAAUGGCAUCCCUUUGCGGAUAAGUGAAGUUGCCCAGGCAUUUAUCUCAGUGCCUUCGGCUGGACAAGAGCUCC
((.((((((..((((((..(((((........)))))...))))))((((((..(......)..)))..(((.(((((((......)))))))..))).))))))))).)). ( -38.40)
>DroEre_CAF1 1435 111 + 1
GUUUUUGAGACUGCUAUGCAGUGUGAUUGAAAACACUAGAAUGGCACCCCUUU-CGGAUAAAUGAAGUUGCCCAAACAUUUAUCUCAGUGCCUUCGGCUGGAAAAGAGCUCC
(((((..(.(((((...)))))....)..)))))....(((.(((((......-.(((((((((............)))))))))..))))))))((((.......)))).. ( -27.50)
>DroYak_CAF1 12093 112 + 1
UUCCUUGUGGUUGCUAAAAAGUGUGAUUGAAAACACUAAAAUGGCAUCCCUUUGUGGAUAAUUGAAGUUGCCCAAACAUUUAUCUCAGUGCCUUCGGCUGGACAAGAGCUCC
...(((((((.(((((...(((((........)))))....))))).)).((((.((.((((....))))))))))........(((((.......))))))))))...... ( -23.10)
>consensus
GAUCUUUUGAUUGCCAUAAAGUGUGAUUGAAAGCACUACAAUGGCAUCCCUUUGCGGAUAAGUGAAGUUGCCCAGGCAUUUAUCUCAGUGCCUUCGGCUGGACAAGAGCUCC
...((((((..((((((..(((((........)))))...))))))(((((((((......))))))..(((.(((((((......)))))))..))).))))))))).... (-24.32 = -26.68 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:49 2006