Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,624,819 – 21,624,932 |
Length | 113 |
Max. P | 0.922145 |
Location | 21,624,819 – 21,624,932 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -35.72 |
Energy contribution | -36.40 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -1.27 |
Structure conservation index | 0.93 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21624819 113 + 23771897 GACGAGAAAGGGCGCUGGUUGAGCCAUGAUGAAAUUGUUGGCUUCGAUUUUGGCUAAUUGCCAGAGUCCAUUUGA-------AAUGCCCACUUAGGGCUAAUUGGUCCCCUCGGAAGCGC ..((((...(((.((..(((((((((............)))))).(((((((((.....))))))))).......-------...((((.....)))).)))..)))))))))....... ( -39.60) >DroSec_CAF1 1173 113 + 1 GACGAGGAAGGGCGCUGGUUGAGCCAUGAUGAAAUUGUUGGCUUCGAUUUUGGCUAAUUGCCGGAGUCCAUUUGA-------AAUGCCCACUUAGGGCUAAUUGGUCCCCUCGGAAGCGC ..(((((..(((((......((((((............)))))).(((((((((.....))))))))).......-------..))))).....(((((....))))))))))....... ( -41.30) >DroSim_CAF1 1161 113 + 1 GACGAGGAAGGGCGCUGGUUGAGCCAUGAUGAAAUUGUUGGCUUCAAUUUUGGCUAAUUGCCGGAGUCCAUUUGA-------AAUGCCCACUUAGAGCUAAUUGGUCCCCUCGGAAGCGC ..(((((..((((.(((((..(((((.....((((((.......)))))))))))....))))).))))......-------.....(((.(((....))).)))...)))))....... ( -34.60) >DroEre_CAF1 143 113 + 1 GACGAGGAAGGGCGAUGGCUGAGCCAUGAUGAAAUUGUUGGCUUCGAUUUUGGCUAAUUGCCGGAGUCCAUUUGA-------AAUGCCCACUUAGGGCUAAUUGGUCCCCUCGGAAGCGC ..(((((..(((((......((((((............)))))).(((((((((.....))))))))).......-------..))))).....(((((....))))))))))....... ( -41.60) >DroYak_CAF1 10586 120 + 1 GAUGUGUAAGGGCGAUGGUUGAGCCAUGAUGAAAUUGUUGGCUUCGAUUUUGGCUAAUUGCCGGAGUCCAUUUGAAAUGUGAAAUGCCCACUUAGGGCUAAUUGGUCCCCUCGGAAGCGC ...((((..(((((......((((((............)))))).(((((((((.....)))))))))................))))).....(((((....)))))........)))) ( -35.10) >consensus GACGAGGAAGGGCGCUGGUUGAGCCAUGAUGAAAUUGUUGGCUUCGAUUUUGGCUAAUUGCCGGAGUCCAUUUGA_______AAUGCCCACUUAGGGCUAAUUGGUCCCCUCGGAAGCGC ..(((((..(((((......((((((............)))))).(((((((((.....)))))))))................))))).....(((((....))))))))))....... (-35.72 = -36.40 + 0.68)
Location | 21,624,819 – 21,624,932 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -30.74 |
Consensus MFE | -28.46 |
Energy contribution | -28.38 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.39 |
Structure conservation index | 0.93 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922145 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21624819 113 - 23771897 GCGCUUCCGAGGGGACCAAUUAGCCCUAAGUGGGCAUU-------UCAAAUGGACUCUGGCAAUUAGCCAAAAUCGAAGCCAACAAUUUCAUCAUGGCUCAACCAGCGCCCUUUCUCGUC (((((..(((((((.(((....((((.....))))...-------.....))).))))(((.....)))....))).(((((............))))).....)))))........... ( -30.10) >DroSec_CAF1 1173 113 - 1 GCGCUUCCGAGGGGACCAAUUAGCCCUAAGUGGGCAUU-------UCAAAUGGACUCCGGCAAUUAGCCAAAAUCGAAGCCAACAAUUUCAUCAUGGCUCAACCAGCGCCCUUCCUCGUC (((((..(((((((.(((....((((.....))))...-------.....))).))))(((.....)))....))).(((((............))))).....)))))........... ( -33.00) >DroSim_CAF1 1161 113 - 1 GCGCUUCCGAGGGGACCAAUUAGCUCUAAGUGGGCAUU-------UCAAAUGGACUCCGGCAAUUAGCCAAAAUUGAAGCCAACAAUUUCAUCAUGGCUCAACCAGCGCCCUUCCUCGUC (((((.....((((.(((....((((.....))))...-------.....))).))))(((.....)))....((((.((((............))))))))..)))))........... ( -29.40) >DroEre_CAF1 143 113 - 1 GCGCUUCCGAGGGGACCAAUUAGCCCUAAGUGGGCAUU-------UCAAAUGGACUCCGGCAAUUAGCCAAAAUCGAAGCCAACAAUUUCAUCAUGGCUCAGCCAUCGCCCUUCCUCGUC (((((((.((((((.(((....((((.....))))...-------.....))).))))(((.....)))....))))))).............(((((...))))).))........... ( -31.60) >DroYak_CAF1 10586 120 - 1 GCGCUUCCGAGGGGACCAAUUAGCCCUAAGUGGGCAUUUCACAUUUCAAAUGGACUCCGGCAAUUAGCCAAAAUCGAAGCCAACAAUUUCAUCAUGGCUCAACCAUCGCCCUUACACAUC (((((((.((((((.((.....((((.....))))((((........)))))).))))(((.....)))....))))))).............((((.....)))).))........... ( -29.60) >consensus GCGCUUCCGAGGGGACCAAUUAGCCCUAAGUGGGCAUU_______UCAAAUGGACUCCGGCAAUUAGCCAAAAUCGAAGCCAACAAUUUCAUCAUGGCUCAACCAGCGCCCUUCCUCGUC ........((((((........((((.....))))...............(((.....(((.....)))......((.((((............))))))..)))...))))))...... (-28.46 = -28.38 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:47 2006