Locus 8222

Sequence ID 3L_DroMel_CAF1
Location 21,612,899 – 21,613,010
Length 111
Max. P 0.570648
window13448

overview

Window 8

Location 21,612,899 – 21,613,010
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 79.04
Mean single sequence MFE -45.61
Consensus MFE -29.95
Energy contribution -31.73
Covariance contribution 1.78
Combinations/Pair 1.21
Mean z-score -1.29
Structure conservation index 0.66
SVM decision value 0.07
SVM RNA-class probability 0.570648
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21612899 111 + 23771897
UGGGCGGAGCAGCAAACCCGUCGGAUGCGUACGCCCUCAGCAUGCAAUUCGAGAGGGUCGAAACCGAGGGUUUGCCACGCAUGUGGAUGACCCACAUCCCGGCCAGAUCCC
(((.(((.((.((((((((.((((...((...((((((..............))))))))...))))))))))))...))((((((.....)))))).))).)))...... ( -48.04)
>DroGri_CAF1 43467 108 + 1
UGCUCGGAGCAGCAGACACGUCGCAUGCAGACACCCUCGUCGUGCAGUCCGAGCGGAUCAAAGCUGAGCGUUUGCCAUGCACUCGCCCGAUAGCCGCCGCCGCCGG---CG
.(((((((((.((......)).)).(((((((......))).)))).)))))))........((((.(((..(((...)))..)))....))))(((((....)))---)) ( -38.80)
>DroSec_CAF1 31141 111 + 1
UGGGCGGAGCAGCAAACCCGUCGGAUGCGUACGCCCUCAGCAUGCAAUUCGAGGGGGUCGAAGCCGAGGGUUUGCCACGCAUGGGGAUGACUUACAUCUCGGCCAGAUCCC
..(((...((.((((((((.((((...((.((.(((((............))))).))))...))))))))))))...))...((((((.....)))))).)))....... ( -48.00)
>DroSim_CAF1 31436 111 + 1
UGGGCGGAGCAGCAAACCCGUCGGAUGCGUACGCCCUCAGCAUGCAAUUCGAGGGGGUCGAAGCCGAGGGUUUGCCACGCAUGGGGAUGACCUACAUCUCGGCCAGAUCCC
..(((.(((..((((((((.((((...((.((.(((((............))))).))))...))))))))))))......((((.....))))...))).)))....... ( -48.20)
>DroEre_CAF1 43679 111 + 1
UGUGCGGAGCAGCAAACCCGUCGAAUGCGUACGCCCUCAGCAUGCAAUUCGAGGGGGUCGAAACCGAGGGUUUGCCACGCGUGGGGAUGACCCACAUCCCGGCCAGGUCCU
.....(((.(.((((((((.(((....((.((.(((((............))))).))))....)))))))))))...(.((.((((((.....)))))).))).).))). ( -48.00)
>DroAna_CAF1 43608 111 + 1
UGGGUGGAACAGCAGACCCUUCGGAUACGAACACCCUCUGCCAGCAGUUCCAGGGGGUCGAAGCUAAGCGUCUGCCAGGUGUGCGGAUGGUGGACUUCUCUCCCAGAUCCC
.(((((((((.(((((...((((....)))).....))))).....))))))(((((..(((((((..((((((((....).))))))).))).)))).)))))....))) ( -42.60)
>consensus
UGGGCGGAGCAGCAAACCCGUCGGAUGCGUACGCCCUCAGCAUGCAAUUCGAGGGGGUCGAAGCCGAGGGUUUGCCACGCAUGGGGAUGACCCACAUCUCGGCCAGAUCCC
(((.((..((.((((((((.((((...((.((.(((((............))))).))))...))))))))))))...))....(((((.....))))))).)))...... (-29.95 = -31.73 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:46 2006