Locus 8221

Sequence ID 3L_DroMel_CAF1
Location 21,610,237 – 21,610,350
Length 113
Max. P 0.818954
window13447

overview

Window 7

Location 21,610,237 – 21,610,350
Length 113
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -35.72
Consensus MFE -24.90
Energy contribution -26.73
Covariance contribution 1.84
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.70
SVM decision value 0.67
SVM RNA-class probability 0.818954
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21610237 113 - 23771897
GCUUAGUGGUACUUGGGACACGGUGCGGAUACAGGCCGGUGAACUGGUACUAAAUCGGCGCUUUCCUAAGUACCCCAGGUGAGUCAAUAAGAACCCAC---A--AACGUACUUCAAUG
.....(.(((((((((((...(((((.(((..(((((((....))))).))..))).))))).))))))))))).)..(((.((........)).)))---.--.............. ( -39.00)
>DroSec_CAF1 28501 112 - 1
GCUUAGUGGUACCUGGGACACGGUGCGGAUUCAGGCCGGCGAACUGGUGCUAAAUCGGCGCUUCCCUAAGUACCCCAGGUGAGUCAAAAAUAAC-UAC---A--AAAGUAGUCCGAUG
((((.(.(((((..((((...(((((.((((.(((((((....))))).)).)))).)))))))))...)))))).))))............((-(((---.--...)))))...... ( -37.70)
>DroSim_CAF1 28775 112 - 1
GCUUAGUGGUACCUGGGACACGGUGCGGAUUCAGGCCGGCGAACUGGUGCUAAAUCGGCGCUUCCCUAAGUACCCCAGGUGAGUCAAAAAUAAC-UAC---A--AAAGUAGUCCGAUG
((((.(.(((((..((((...(((((.((((.(((((((....))))).)).)))).)))))))))...)))))).))))............((-(((---.--...)))))...... ( -37.70)
>DroEre_CAF1 40709 116 - 1
GCUUAGUGGUACGUGGGACACGGUGCGGAUUCAGACCGGCGAACUCGUGCUGAAUCGGCGCUUUCCUAAGUACCCCAGGUAAGUCAAAAAGAAC-AAUG-AAGAUAAAUACUUCUAUA
((((.(.(((((.(((((...(((((.(((((((..(((.....)))..))))))).))))).))))).)))))).))))..............-...(-(((.......)))).... ( -38.60)
>DroYak_CAF1 39177 111 - 1
GCUUAGUGGCACCUGGGACACGGUGCGGAUUCAGGCCGGCGAACUGGUGCUAAAUCGGCGGUUCCCUAAGUACCCCAGGUGAAUAAAAAAUA----AUC-AA--AAAAUACUUGAAUU
.........((((((((..((...((.((((.(((((((....))))).)).)))).))((...))...))..))))))))...........----.((-((--.......))))... ( -30.90)
>DroMoj_CAF1 51134 107 - 1
GCUCAGUGGCAGCUGGGAAACGGUGCGCAUCCAGACGGGUGAACUGGCACUGAAUCGACGAUUCCCCAAGUUCCCUAGGUAAUUAU-----GCC-AAACAGA---CGCUAAUUCA--U
((((((.((.(((((((....(((((.(((((....))))).....)))))(((((...)))))))).)))))))).((((....)-----)))-.....))---.)).......--. ( -30.40)
>consensus
GCUUAGUGGUACCUGGGACACGGUGCGGAUUCAGGCCGGCGAACUGGUGCUAAAUCGGCGCUUCCCUAAGUACCCCAGGUGAGUCAAAAAUAAC_AAC___A__AAAGUACUUCAAUG
((((.(.(((((..((((...(((((.((((.(((((((....))))).)).)))).)))))))))...)))))).))))...................................... (-24.90 = -26.73 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:44 2006