Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,600,341 – 21,600,449 |
Length | 108 |
Max. P | 0.730139 |
Location | 21,600,341 – 21,600,449 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -40.69 |
Consensus MFE | -22.49 |
Energy contribution | -22.50 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.45 |
Mean z-score | -1.66 |
Structure conservation index | 0.55 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21600341 108 - 23771897 UACAAGGCCGAUGACCACGGAUUUGUACCAGAGGGCGGAGCAAUCCUGCCCCAGAUUUCGCUGGCCGCCAAGCAGGUCAGCGAGCAGGUGCCCC---AACCAGAUCUUGAC ..((((((((.......)))....(((((.(.(((((((....))).)))))....((((((((((........))))))))))..)))))...---.......))))).. ( -43.00) >DroVir_CAF1 35855 111 - 1 UACAAGGCCGAUAAUCGCGGUUUUGUGCCCGAGGGAGGCAACAUAUUGCCACAGAUAUCGCUGGCCGCCAAGCUGGCCAGUGAGCAGAAGCAGCUUUUUCCCGAUACGGAC ((((((((((.......)))))))))).(((.(((((((((....))))).......(((((((((((...)).)))))))))((....)).......))))....))).. ( -45.00) >DroGri_CAF1 30994 111 - 1 UAUAAGGCCGAUGAUCACGGCUUUGUGCCCGAGGGCGGCAACAUAUUGCCACAGAUAUCGGAGGCCGCCAAGGUGACCAGUGAGCUGAUGCCGCCGAUGCCUGAUUUGGAU .(((((((((.......)))))))))(((....)))(((((....))))).(((.((((((.((((((....)))..(((....)))..))).)))))).)))........ ( -45.30) >DroWil_CAF1 43340 108 - 1 UAUAAGGCCGAUGAUCAUGGCUUUGUUCCCGAAGGUGGUGAUAUAUUGCCCCAGAUAUCGGUGGCCGCCAAACAGGUCAGUGAGAUAGUGGCUC---AACCAGAUUUGGAU .(((((((((.......)))))))))..(((((..((((........(((.......(((.(((((........))))).)))......)))..---.))))..))))).. ( -32.92) >DroAna_CAF1 31785 108 - 1 UACAAGGCCGAUGACCAUGGCUUUGUUCCAGAGGGAGGCGCCAUCCUGCCACAAAUCUCGGUGGCUGCCAAGCAAGUAAGCGAGCAGGUUUCUC---AGCCUGAUCUGGAA .(((((((((.......)))))))))((((((...((((.....((((((((........))))).((...((......))..)))))......---.))))..)))))). ( -39.50) >DroPer_CAF1 35729 108 - 1 UACAAGGCCGACGACCAUGGCUUCGUACCCGAAGGCGGUGCCAUAUUGCCGCAGAUUUCGGUGGCCGCCAAACAAGUUAGCCAGCUGGUGGCCC---AGCCCGAUCUGGAG .....(((..((.....((((...((((((....).)))))......(((((.(....).))))).)))).....))..))).(((((....))---)))((.....)).. ( -38.40) >consensus UACAAGGCCGAUGACCACGGCUUUGUACCCGAGGGCGGCGACAUAUUGCCACAGAUAUCGGUGGCCGCCAAGCAGGUCAGCGAGCAGGUGCCCC___AGCCAGAUCUGGAC ((((((((((.......))))))))))((.((.(((((((......)))).......(((.(((((........))))).)))...............)))...)).)).. (-22.49 = -22.50 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:41 2006