Locus 8218

Sequence ID 3L_DroMel_CAF1
Location 21,586,790 – 21,586,909
Length 119
Max. P 0.861465
window13443

overview

Window 3

Location 21,586,790 – 21,586,909
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 83.26
Mean single sequence MFE -38.18
Consensus MFE -23.21
Energy contribution -24.93
Covariance contribution 1.72
Combinations/Pair 1.20
Mean z-score -2.44
Structure conservation index 0.61
SVM decision value 0.83
SVM RNA-class probability 0.861465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21586790 119 + 23771897
AGAACCUGAGAAGUUACGUGGAUUUGACAGCGUGCGCCAUCUGUCUGCAGGUUACUGAAGCAGUGCUAGUGAACCGACUAUGCCGAUAGGUGGCGUUAUUUCCAAUUGAAAACUUCAAC
.........((((((...((((..((((.(....)((((((((((.((((((((((..(((...))))))).))).....))).))))))))))))))..))))......))))))... ( -39.50)
>DroSec_CAF1 4917 116 + 1
AGAACCUGAGAAGUUACAUGGAUUUGACAGCA--CGCCAUCUGUCUGCAGGUUACUGAAGCAGUGCCUGUGAACCGACUA-GCCGAUAGGUGGCGUUAUUUCCAAUUAAAAGGUUCAAC
.((((((......(((..((((..((.....(--(((((((((((.((((((.((((...)))))))))).....(....-..)))))))))))))))..))))..))).))))))... ( -40.20)
>DroSim_CAF1 4986 116 + 1
AGAACCUGAGAAGUUACAUGGAUUUGACAGCA--CGCCAUCUGUCUGCAGGUUACUGAAGCAGUGCCUGUGAACCGACUA-GCCGAUAGGUGGCGUUAUUUCCAAUUAAAAGGUUCAAC
.((((((......(((..((((..((.....(--(((((((((((.((((((.((((...)))))))))).....(....-..)))))))))))))))..))))..))).))))))... ( -40.20)
>DroEre_CAF1 17392 115 + 1
GGAACGUAAGAAGCUGCAUGGAUUUGACAGC----GCCAUCUGUCUGUAGGUUACUCAAGCAGUGCUGGUGAACCGGCUAUGCCGAUAGAUGGCACUAUUUCAAAUUAAUAACUUCACC
.........((((.......(((((((.((.----((((((((((((.((....)))).(((..(((((....)))))..))).)))))))))).))...))))))).....))))... ( -39.90)
>DroYak_CAF1 14879 118 + 1
GGAACCUGAGAAGAUACAUUUAUUUAACAGCGUGCGCCACCUGGCCGUAGGUUACACAAGCAGAGCUGGUGUACCGGCUUU-CCAAUAGGUGGCAUUAUUUCAAACUCUAGACUUCAAC
(((...(((((.(((.((((((((....(((.((((((....)).)))).)))......(.((((((((....))))))))-.)))))))))..))).)))))...))).......... ( -31.10)
>consensus
AGAACCUGAGAAGUUACAUGGAUUUGACAGCA__CGCCAUCUGUCUGCAGGUUACUGAAGCAGUGCUGGUGAACCGACUAUGCCGAUAGGUGGCGUUAUUUCCAAUUAAAAACUUCAAC
.........((((((...((((..((((.......((((((((((.((.((((((...(((...))).))).)))......)).))))))))))))))..))))......))))))... (-23.21 = -24.93 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:40 2006