Locus 8217

Sequence ID 3L_DroMel_CAF1
Location 21,585,170 – 21,585,261
Length 91
Max. P 0.500000
window13442

overview

Window 2

Location 21,585,170 – 21,585,261
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -22.97
Consensus MFE -18.08
Energy contribution -18.25
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -0.90
Structure conservation index 0.79
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21585170 91 - 23771897
CUGAUAGAGCGU--------CGUCGUCGUCUGGC-UCAGGUGUCGAUCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
.(((..(((((.--------((....)).)((((-((.(((.((......)))))...))))))....(((((.......)))))))))....))).... ( -24.60)
>DroVir_CAF1 19634 74 - 1
--------------------------GAUCUGGCUGCAGGUGUCAGCCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
--------------------------(((((((((((....).)))))).((((..((....))....(((((.......)))))))))))))....... ( -21.50)
>DroGri_CAF1 17021 72 - 1
----------------------------UCUGGCUGCAGGUGUCAGUCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGUUUUCAUUUC
----------------------------..(((((.((((..((......))..)))).)))))....(((((.......)))))............... ( -18.60)
>DroWil_CAF1 21374 88 - 1
CUCAUU--GCGU--------CCU--CCGUCUGGCUGCAGGUGUCGAUCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
...(((--((((--------((.--..((.(((((.((((..((......))..)))).))))).)).)).)))))))...................... ( -21.20)
>DroMoj_CAF1 22205 74 - 1
--------------------------GCACUGGCUGCAGGUGUCAGCCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
--------------------------....(((((((....).)))))).((((..((....))....(((((.......)))))))))........... ( -20.20)
>DroAna_CAF1 17702 99 - 1
-AGAUGGAGUGUAGAUGGAGCGACGUCGUCUGGCUGCAGGUGUCGAUCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
-....((((((.((((.(((((..((((..(((((.((((..((......))..)))).)))))...))))..(((.....)))))))).)))))))))) ( -31.70)
>consensus
__________________________CGUCUGGCUGCAGGUGUCAAUCAAGAACUUUGGAGCCACAUUGGCAUGCAAUCAAUGCCGUUCGAUUUCAUUUC
..............................(((((.((((..((......))..)))).)))))....(((((.......)))))............... (-18.08 = -18.25 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:39 2006