Locus 8215

Sequence ID 3L_DroMel_CAF1
Location 21,579,925 – 21,580,071
Length 146
Max. P 0.708620
window13439 window13440

overview

Window 9

Location 21,579,925 – 21,580,016
Length 91
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -19.88
Consensus MFE -11.88
Energy contribution -11.75
Covariance contribution -0.13
Combinations/Pair 1.11
Mean z-score -2.06
Structure conservation index 0.60
SVM decision value 0.33
SVM RNA-class probability 0.691787
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21579925 91 + 23771897
GACAACAAACAAGCUCGUAAGU--UCAAGCACACAA-ACAUAA--------AUAGACACACGUAUGCAAACCUAUUUAUGUGUUUGUAAGAGUUCGAAUGGG
....((((((..(((.(.....--.).)))......-((((((--------((((................))))))))))))))))............... ( -16.29)
>DroEre_CAF1 10912 87 + 1
GACAACAAACAAGCACGUAAGU--CUAAGCACACAA-GCAUAA--------AUAAGCACACGUAUGCA----UAUUUAUGUGUUUGUAAGAGUUCGAAUGGG
........((((((((((((((--....((......-))....--------....(((......))).----.))))))))))))))............... ( -18.80)
>DroYak_CAF1 8624 87 + 1
UACAACAAACAAGCUCGUAAGU--UCAAGCACACAA-ACAUAA--------AUAAGCACACGUAUGCA----UAUUUAUGUGUUUGUAAGAGAUCGAAUGGG
....((((((..(((.(.....--.).)))......-((((((--------(((.(((......))).----)))))))))))))))............... ( -18.80)
>DroAna_CAF1 12781 98 + 1
GACAACAAACAACCUCGUAAAUAGUCAAGCACAUAACACACAAACACUCGGAUAGAUCCGAGUAUGCA----UAUUUAUGUGUUUGUACAAGUUCGAAUGGG
............(((((.((...(((((((((((((.........(((((((....))))))).....----...))))))))))).))...)))))..)). ( -25.63)
>consensus
GACAACAAACAAGCUCGUAAGU__UCAAGCACACAA_ACAUAA________AUAAACACACGUAUGCA____UAUUUAUGUGUUUGUAAGAGUUCGAAUGGG
........((((((.(((((((......(((.((...........................)).)))......))))))).))))))............... (-11.88 = -11.75 +  -0.13)

alignment

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secondary structure

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dotplot

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Window 0

Location 21,579,981 – 21,580,071
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 89.96
Mean single sequence MFE -18.77
Consensus MFE -16.62
Energy contribution -15.88
Covariance contribution -0.75
Combinations/Pair 1.30
Mean z-score -1.50
Structure conservation index 0.89
SVM decision value 0.37
SVM RNA-class probability 0.708620
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21579981 90 + 23771897
AAACCUAUUUAUGUGUUUGUAAGAGUUCGAAUGGGUUUAUGUAUAUUCACCCAUGGCUGAAGUAUUUUUAUUGACUUCAGCUUUGGCGUU
((((((((((..(..(((....)))..)))))))))))..........(((((.(((((((((..........))))))))).))).)). ( -23.90)
>DroEre_CAF1 10968 86 + 1
A----UAUUUAUGUGUUUGUAAGAGUUCGAAUGGGUUUAUGUAUAUUCACCCAUGGUUGAAGUAUUUUUAUUGACUUUAGCUUUGGCGUU
.----.......(((..((((.(((..(....)..)))...))))..)))(((.(((((((((..........))))))))).))).... ( -17.50)
>DroYak_CAF1 8680 85 + 1
A----UAUUUAUGUGUUUGUAAGAGAUCGAAUGGGUUUAUGUAUAUUCACCCAUGGUUGAGGUGUUUUUAUUGACUUUAGCUUUGGCGU-
.----.......(((..((((..(((((.....)))))...))))..)))(((.(((((((((..........))))))))).)))...- ( -19.10)
>DroAna_CAF1 12848 86 + 1
A----UAUUUAUGUGUUUGUACAAGUUCGAAUGGGCUUAUGUAUAGUCACCCAUGGGUAAACUAUUUUUAUUGACUUUGGCUUUGGCGUU
.----((((((((.((((((((((((((....)))))..)))))))..)).))))))))....................((....))... ( -14.60)
>consensus
A____UAUUUAUGUGUUUGUAAGAGUUCGAAUGGGUUUAUGUAUAUUCACCCAUGGUUGAAGUAUUUUUAUUGACUUUAGCUUUGGCGUU
............(((..((((.(((..(....)..)))...))))..)))(((.(((((((((..........))))))))).))).... (-16.62 = -15.88 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:37 2006