Locus 8214

Sequence ID 3L_DroMel_CAF1
Location 21,578,306 – 21,578,506
Length 200
Max. P 0.889834
window13437 window13438

overview

Window 7

Location 21,578,306 – 21,578,426
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -48.30
Consensus MFE -47.07
Energy contribution -47.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.97
SVM decision value 0.41
SVM RNA-class probability 0.726014
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21578306 120 - 23771897
GUACUCUUUGUACUACCUUCGCGGGCCAGGGCCUGCUCUUGUUAUAGCCGAAACGAAGCUCGUGGGCUUGGCACACGCUGGCCCCCGAAUCGCAACUGUGAAGCUCGGGCCAUAGGAAUU
((((.....))))..(((..(((.((((((.((.(((.(((((........))))))))....)).))))))...)))((((((..(..((((....))))..)..)))))).))).... ( -46.50)
>DroSec_CAF1 25657 120 - 1
GUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUUGUUAUGGCCGAAACGAAGCUCGUGGGCUUGGCACACGCUGGCCCCCGAAUCGCAACUGUGAAGCUCGGGCCAUAGGAAUU
((((.....)))).......((((((....))))))..((.((((((((....(((.(((((.(((((.(((....)))))))).))).((((....)))).))))))))))))).)).. ( -49.20)
>DroSim_CAF1 25894 120 - 1
GUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUUGUUAUGGCCGAAACGAAGCUCGUGGGCUUGGCACACGCUGGCCCCCGAAUCGCAACUGUGAAGCUCGGGCCAUAGGAAUU
((((.....)))).......((((((....))))))..((.((((((((....(((.(((((.(((((.(((....)))))))).))).((((....)))).))))))))))))).)).. ( -49.20)
>consensus
GUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUUGUUAUGGCCGAAACGAAGCUCGUGGGCUUGGCACACGCUGGCCCCCGAAUCGCAACUGUGAAGCUCGGGCCAUAGGAAUU
((((.....)))).......((((((....))))))..((.((((((((....(((.(((((.(((((.(((....)))))))).))).((((....)))).))))))))))))).)).. (-47.07 = -47.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 21,578,386 – 21,578,506
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -36.70
Consensus MFE -36.70
Energy contribution -36.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 1.00
SVM decision value 0.96
SVM RNA-class probability 0.889834
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21578386 120 - 23771897
CCUAAGUCUUUUGUUUUGCGCGCAUGGACUGCAAAUGCCCGGCCAUUAUUAUCUAUGAGUUAUUUACGCUCGGCGAUCUCGUACUCUUUGUACUACCUUCGCGGGCCAGGGCCUGCUCUU
....(((((..(((.......))).)))))(((...((((((((...........(((((.......)))))((((....((((.....)))).....)))).)))).)))).))).... ( -36.70)
>DroSec_CAF1 25737 120 - 1
CCUAAGUCUUUUGUUUUGCGCGCAUGGACUGCAAAUGCCCGGCCAUUAUUAUCUAUGAGUUAUUUACGCUCGGCGAUUUCGUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUU
....(((((..(((.......))).)))))(((...((((((((...........(((((.......)))))((((....((((.....)))).....)))).)))).)))).))).... ( -36.70)
>DroSim_CAF1 25974 120 - 1
CCUAAGUCUUUUGUUUUGCGCGCAUGGACUGCAAAUGCCCGGCCAUUAUUAUCUAUGAGUUAUUUACGCUCGGCGAUUUCGUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUU
....(((((..(((.......))).)))))(((...((((((((...........(((((.......)))))((((....((((.....)))).....)))).)))).)))).))).... ( -36.70)
>consensus
CCUAAGUCUUUUGUUUUGCGCGCAUGGACUGCAAAUGCCCGGCCAUUAUUAUCUAUGAGUUAUUUACGCUCGGCGAUUUCGUACUCUUUGUACUGCCUUCGCGGGCCAGGGCCUGCUCUU
....(((((..(((.......))).)))))(((...((((((((...........(((((.......)))))((((....((((.....)))).....)))).)))).)))).))).... (-36.70 = -36.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:36 2006