Locus 8211

Sequence ID 3L_DroMel_CAF1
Location 21,575,932 – 21,576,052
Length 120
Max. P 0.971591
window13431 window13432

overview

Window 1

Location 21,575,932 – 21,576,052
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -43.33
Consensus MFE -40.92
Energy contribution -41.37
Covariance contribution 0.45
Combinations/Pair 1.07
Mean z-score -2.18
Structure conservation index 0.94
SVM decision value 1.06
SVM RNA-class probability 0.908890
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21575932 120 + 23771897
CGGGGUGAAGAAAUGAGACGAGUUCCUCAGCAAGUUUCAGAAGUACGGCAGGCUGAAACUUGAGGUAUAGGGUGUGGACCCCAGAGGAUUGAAAUAUCUUCCACGUUGCCGCUCCGAAAG
(((((((..((..((.((.((..(((((..((((((((((..(.....)...)))))))))).......((((....))))..)))))........)).))))..))..))))))).... ( -38.50)
>DroSec_CAF1 23296 120 + 1
CGGCGUGAAGAAAUGAGAUGAGUUCCUCAGCAAGUUUCAGAAGUACGGCAGGCUGAAACUUGAGGUCUAGGGUGUGGACUCCAGAGGAUUGAGGGGUCUUCCACGUUGCCGCGCCGAAAG
(((((((..((..((.((.((.((((((((((((((((((..(.....)...))))))))))...(((.((((....)))).)))...)))))))))).))))..))..))))))).... ( -44.00)
>DroSim_CAF1 23526 120 + 1
CGGCGUGAAGAAAUGAGAUGAGUUCCUCAGCAAGUUUCAGAAGUACGGCAGGCUGAAACUUGAGGUCUAGGGUGUGGACCCCAGAGGAUUGAGGGAUCUUCCACGUUGCCGCGCCGAAAG
(((((((..((..((.((.((.((((((((((((((((((..(.....)...))))))))))...(((.((((....)))).)))...)))))))))).))))..))..))))))).... ( -47.50)
>consensus
CGGCGUGAAGAAAUGAGAUGAGUUCCUCAGCAAGUUUCAGAAGUACGGCAGGCUGAAACUUGAGGUCUAGGGUGUGGACCCCAGAGGAUUGAGGGAUCUUCCACGUUGCCGCGCCGAAAG
(((((((..((..((.((.((.((((((((((((((((((..(.....)...))))))))))...(((.((((....)))).)))...)))))))))).))))..))..))))))).... (-40.92 = -41.37 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 21,575,932 – 21,576,052
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -36.80
Consensus MFE -34.70
Energy contribution -35.70
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.94
SVM decision value 1.68
SVM RNA-class probability 0.971591
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21575932 120 - 23771897
CUUUCGGAGCGGCAACGUGGAAGAUAUUUCAAUCCUCUGGGGUCCACACCCUAUACCUCAAGUUUCAGCCUGCCGUACUUCUGAAACUUGCUGAGGAACUCGUCUCAUUUCUUCACCCCG
....(((.(((....))).(((((........(((((((((((....)))))).....((((((((((...(.....)..))))))))))..)))))............)))))...))) ( -34.35)
>DroSec_CAF1 23296 120 - 1
CUUUCGGCGCGGCAACGUGGAAGACCCCUCAAUCCUCUGGAGUCCACACCCUAGACCUCAAGUUUCAGCCUGCCGUACUUCUGAAACUUGCUGAGGAACUCAUCUCAUUUCUUCACGCCG
....(((((((....))).(((((...........(((((.((....)).)))))(((((((((((((...(.....)..))))))))...))))).............)))))..)))) ( -34.40)
>DroSim_CAF1 23526 120 - 1
CUUUCGGCGCGGCAACGUGGAAGAUCCCUCAAUCCUCUGGGGUCCACACCCUAGACCUCAAGUUUCAGCCUGCCGUACUUCUGAAACUUGCUGAGGAACUCAUCUCAUUUCUUCACGCCG
....(((((((....))).(((((..(((((....((((((((....))))))))...((((((((((...(.....)..)))))))))).))))).............)))))..)))) ( -41.66)
>consensus
CUUUCGGCGCGGCAACGUGGAAGAUCCCUCAAUCCUCUGGGGUCCACACCCUAGACCUCAAGUUUCAGCCUGCCGUACUUCUGAAACUUGCUGAGGAACUCAUCUCAUUUCUUCACGCCG
....(((((((....))).(((((...........((((((((....))))))))(((((((((((((...(.....)..))))))))...))))).............)))))..)))) (-34.70 = -35.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:30 2006