Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,574,694 – 21,574,797 |
Length | 103 |
Max. P | 0.842333 |
Location | 21,574,694 – 21,574,797 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -37.20 |
Consensus MFE | -31.22 |
Energy contribution | -31.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.27 |
Structure conservation index | 0.84 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21574694 103 + 23771897 -----------------UUGAAUAAAGGCGCCAACUGGGCAGCACUGGUAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACAUUUGC -----------------.........((((.....((((((((((((((((((((....)))..((((((.....))))))))))))..)))))))).)))...))))............ ( -35.10) >DroSec_CAF1 21922 120 + 1 UAGCAAUGACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGACAGCGCCAUGUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACAGUGCUAUAAACUUUUGC ..((((.....))))...........(((((....(((((((((((((.((((((....)))..((((((.....))))))))).))..)))))))).)))..)))))............ ( -38.10) >DroSim_CAF1 22129 120 + 1 UAGCAAUAACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGGCAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACUUUUGC (((((....((((...........)))).......((((((((((((((...))))((((((.(((((((.....)))))))..))))))))))))).)))...)))))........... ( -38.40) >consensus UAGCAAU_ACCUUGCAUUUGAAUAAAGGCGCCAACUGGGCAGCACUGGCAGCGCCAUUUGGUUUGGGUCUCAGCUAGAUCCGUUAUCAAAGUGCUGCACCACACUGCUAUAAACUUUUGC ..........................((((.....(((((((((((((.((((((....)))..((((((.....))))))))).))..)))))))).)))...))))............ (-31.22 = -31.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:28 2006