Locus 8209

Sequence ID 3L_DroMel_CAF1
Location 21,573,420 – 21,573,540
Length 120
Max. P 0.626622
window13429

overview

Window 9

Location 21,573,420 – 21,573,540
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -48.77
Consensus MFE -44.54
Energy contribution -44.77
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.626622
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21573420 120 + 23771897
GGUGUCGAUCCUGACGAUGGGUGCCAUAAUCCAGUCCUUGAAGGUUCCCGACUUCAACGGAAAGCUGGAGGACGUGUGCCUGGGCUACGACGACGUGGCAGGCUACUACCGUAACCAGCA
((..((.(((.....))).))..)).........(((((((((........)))))).)))..(((((...(((.((((((..((((((....)))))))))).))...)))..))))). ( -45.60)
>DroSec_CAF1 20607 120 + 1
GGUGUCGAUUCUGACGAUGGGUGCCAUCAUACAGUCCUUGAAGGUGCCCGACUUCAACGGCAAGCUGGAGGACGUGUGCCUGGGCUACGACGACGUGGCAGGGUACUACCGUAACCAGCA
..(((((....(((.(.((((..((.(((.........))).))..)))).).))).))))).(((((...(((.((((((..((((((....)))))).))))))...)))..))))). ( -51.60)
>DroSim_CAF1 20834 120 + 1
GGUGUCGAUCCUGACGAUGGGUGCCAUCAUCCAGUCCUUGAAGGUGCCCGACUUCAACGGCAAGCUGGAGGACGUGUGCCUGGGUUACGACGACGUGGCAGGGUACUACCGUAACCAGCA
..(((((....(((.(.((((..((.(((.........))).))..)))).).))).))))).(((((...(((.((((((..((((((....)))))).))))))...)))..))))). ( -49.10)
>consensus
GGUGUCGAUCCUGACGAUGGGUGCCAUCAUCCAGUCCUUGAAGGUGCCCGACUUCAACGGCAAGCUGGAGGACGUGUGCCUGGGCUACGACGACGUGGCAGGGUACUACCGUAACCAGCA
((..((.(((.....))).))..))........(((.((((((........)))))).)))..(((((...(((.((((((..((((((....)))))).))))))...)))..))))). (-44.54 = -44.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:27 2006