Locus 8208

Sequence ID 3L_DroMel_CAF1
Location 21,572,437 – 21,572,557
Length 120
Max. P 0.765904
window13428

overview

Window 8

Location 21,572,437 – 21,572,557
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -42.80
Consensus MFE -41.31
Energy contribution -41.20
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.79
Structure conservation index 0.97
SVM decision value 0.52
SVM RNA-class probability 0.765904
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21572437 120 - 23771897
GUAGAACUGCAUACCGGGCUGGUCGGUCCAAACCUCCAGUACCCGGCAGGAUGGCGGAUGCACGAUCUUGGCCACCUUGGCUACACUUUUUUGCACACGCCCUCCGUUGACCACGAAGCA
........((...(((((((((..(((....))).))))..)))))..(((.((((..((((.((...(((((.....))))).....)).))))..)))).)))............)). ( -43.60)
>DroSec_CAF1 19597 120 - 1
GUAGAACUGCAUGCCGGGCUGGUCGGUCCAAACCUCCAGUACCCGGCAAGAUGGCGGAUGCACGAUCUUAGCCACCUUGGCUACACUUUUUUGCACACGUCCUCCGUUGACCACGAAGCA
........((.(((((((((((..(((....))).))))..))))))).(((((.(((((((.((...(((((.....))))).....)).))))....))).))))).........)). ( -42.40)
>DroSim_CAF1 19822 120 - 1
GUAGAACUGCAUGCCGGGCUGGUCGGUCCAAACCUCCAGUACCCGGCAAGAUGGCGGAUGCACGAUCUUAGCCACCUUGGCUACACUUUUUUGCACACGUCCUCCGUUGACCACGAAGCA
........((.(((((((((((..(((....))).))))..))))))).(((((.(((((((.((...(((((.....))))).....)).))))....))).))))).........)). ( -42.40)
>consensus
GUAGAACUGCAUGCCGGGCUGGUCGGUCCAAACCUCCAGUACCCGGCAAGAUGGCGGAUGCACGAUCUUAGCCACCUUGGCUACACUUUUUUGCACACGUCCUCCGUUGACCACGAAGCA
........((.(((((((((((..(((....))).))))..))))))).((.((((..((((.((...(((((.....))))).....)).))))..)))).))(((.....)))..)). (-41.31 = -41.20 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:26 2006