Locus 8207

Sequence ID 3L_DroMel_CAF1
Location 21,571,026 – 21,571,146
Length 120
Max. P 0.974313
window13427

overview

Window 7

Location 21,571,026 – 21,571,146
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -44.17
Consensus MFE -42.64
Energy contribution -42.87
Covariance contribution 0.23
Combinations/Pair 1.06
Mean z-score -2.66
Structure conservation index 0.97
SVM decision value 1.73
SVM RNA-class probability 0.974313
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21571026 120 + 23771897
CAUCGCCAGUUACUUGGCCAACAAGGGAGCCUACAUCGGUGGGACCCUCGGACGAGUGGCCAACCGGGUGGCCAAUGGCGAGUAUACGUUUAACGACACGAAAGUCUCGGUGACAAAAAA
..((((((...(((((.((....((((..(((((....))))).)))).)).)))))(((((......)))))..))))))......(((...(((.((....)).)))..)))...... ( -45.90)
>DroSec_CAF1 18415 120 + 1
CAUCGCCAGCUACUUGGCCAACAAGGGAGCCUAUAUCGGAGGGACCCUCGGACGAGUGGCCAACCGAGUGGCCAAUGGCGAGUAUACGUUUAACGACAUGAAAGUCUCGGUGACAAAAAA
..(((((.((((.(((((((...(((...)))...((((..((.(((((....))).))))..)))).)))))))))))...............(((......)))..)))))....... ( -41.70)
>DroSim_CAF1 18635 120 + 1
CAUCGCCAGCUACUUGGCCAACAAGGGAGCCUAUAUCGGAGGGACCCUCGGACGAGUGGCCAACCGAGUGGCCAAUGGCGAGUAUACGUUUAACGACACGAAAGUCUCGGUGACAAAAAA
..((((((.....(((((((...(((...)))...((((..((.(((((....))).))))..)))).)))))))))))))......(((...(((.((....)).)))..)))...... ( -44.90)
>consensus
CAUCGCCAGCUACUUGGCCAACAAGGGAGCCUAUAUCGGAGGGACCCUCGGACGAGUGGCCAACCGAGUGGCCAAUGGCGAGUAUACGUUUAACGACACGAAAGUCUCGGUGACAAAAAA
..((((((.....(((((((...(((...)))...((((..((.(((((....))).))))..)))).)))))))))))))......(((...(((.((....)).)))..)))...... (-42.64 = -42.87 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:25 2006