| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,565,962 – 21,566,082 |
| Length | 120 |
| Max. P | 0.870071 |
| Location | 21,565,962 – 21,566,082 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.44 |
| Mean single sequence MFE | -39.43 |
| Consensus MFE | -39.00 |
| Energy contribution | -39.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.870071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21565962 120 + 23771897 CCAGACUUUCCAUCUCCUGGGAUGGGGGUGAUGCUGACGCAAUGCUUCAAAUUUGGAGUCUUGUCCUUCCAGAUAUUUUUGUACUUGUCAGCAAUGUCAUGGUCACUCGUCUUGGCGGAG ((((((...((((((....))))))(((((((((((((((((.((((((....)))))).)))).....((((....)))).....))))))).........))))))))).)))..... ( -40.00) >DroSec_CAF1 13604 120 + 1 CCAGACUUUCCAUCUCCUGGGAUGGGGGUGAUGCUGACGCAAUGCUUCAAAUUUGGAGUCUUGUCCUUCCAGAUAUUUUUGUACUUGUCAGCAAUGUCAUGGUCACUCGUCUUAGCGGAG ((((((...((((((....))))))(((((((((((((((((.((((((....)))))).)))).....((((....)))).....))))))).........))))))))))....)).. ( -38.30) >DroSim_CAF1 13786 120 + 1 CCAGACUUUCCAUCUCCUGGGAUGGGGGUGAUGCUGACGCAAUGCUUCAAAUUUGGAGUCUUGUCCUUCCAGAUAUUUUUGUACUUGUCAGCAAUGUCAUGGUCACUCGUCUUGGCGGAG ((((((...((((((....))))))(((((((((((((((((.((((((....)))))).)))).....((((....)))).....))))))).........))))))))).)))..... ( -40.00) >consensus CCAGACUUUCCAUCUCCUGGGAUGGGGGUGAUGCUGACGCAAUGCUUCAAAUUUGGAGUCUUGUCCUUCCAGAUAUUUUUGUACUUGUCAGCAAUGUCAUGGUCACUCGUCUUGGCGGAG (((((((..((((((....))))))..)...(((((((((((.((((((....)))))).)))).....((((....)))).....)))))))..))).)))....((((....)))).. (-39.00 = -39.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:17 2006