| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,564,922 – 21,565,042 |
| Length | 120 |
| Max. P | 0.817665 |
| Location | 21,564,922 – 21,565,042 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -46.53 |
| Consensus MFE | -43.25 |
| Energy contribution | -43.37 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21564922 120 - 23771897 CAACUGCAGGUGUCGCAUCUGGCGGAGGUAUUUCACCGGCAAGUGUGGCUGCUGCAGUAGCUGCCCUGAAAUCCUCACAACAGCAGAUGAAGUCAGUCGCCAGUCUUUCGCAUCUGGCGG ..(((((((..((((((..((.(((.((....)).))).))..))))))..))))))).((((...(((.....)))...)))).............((((((..........)))))). ( -45.50) >DroSec_CAF1 12564 120 - 1 CAACUGCAGGUGUCUCAUCUGGCGGAGGUAUUUCACCGGCUAGUGUGGCUGCUGCAGUAGCUGCCCUGAAAUCCUCACAACAGCAGCUGAAAUCAGUCGCCAGUCUUUCGCAUCUGGCGG ...((((((((((.....((((((((((.((((((.((((((.((..(...)..)).))))))...)))))))))).........((((....))))))))))......)))))).)))) ( -49.00) >DroSim_CAF1 12746 120 - 1 CAACUGCAGGUGUCUCAUCUGGUGGAGGUAUUUCACCGGCUAGUGUGGCUGCUGCAGUAGCUGCCCUGAAAUCCUCACAACAGCAGAUGAAAUCAGUCGCCAGUCUUUCGCAUCUGGCGG ........(((...(((((((.((((((.((((((.((((((.((..(...)..)).))))))...))))))))))....)).))))))).)))...((((((..........)))))). ( -45.10) >consensus CAACUGCAGGUGUCUCAUCUGGCGGAGGUAUUUCACCGGCUAGUGUGGCUGCUGCAGUAGCUGCCCUGAAAUCCUCACAACAGCAGAUGAAAUCAGUCGCCAGUCUUUCGCAUCUGGCGG ...((((((((((.....((((((((((.((((((.((((((.((..(...)..)).))))))...))))))))))....((.....))........))))))......)))))).)))) (-43.25 = -43.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:16 2006