Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,564,223 – 21,564,336 |
Length | 113 |
Max. P | 0.522830 |
Location | 21,564,223 – 21,564,336 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -21.43 |
Consensus MFE | -13.68 |
Energy contribution | -13.13 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.17 |
Mean z-score | -2.01 |
Structure conservation index | 0.64 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21564223 113 + 23771897 ACAUUCUUAUAAAUCCAGCAAUACUGUAGACACUAUAAACUUGGUGAACCA-------GUACGCCAUGGUUUUCUACAUGCCACAUGCUGGCCAAACAACUAUACAAAUCAAACAGAUUA ..............((((((....(((((((((((......)))))(((((-------........))))).)))))).......))))))...............((((.....)))). ( -23.20) >DroSec_CAF1 11867 112 + 1 ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAA-------- .................(((((...))))).......(.(((((((.....((.....))..((..((((((.....))))))...)).))))))))...............-------- ( -19.90) >DroSim_CAF1 12041 120 + 1 ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAAACAGAUUA ...........((((..(((((...))))).......(.(((((((.....((.....))..((..((((((.....))))))...)).))))))))..................)))). ( -21.20) >consensus ACAUUUUUAUAAAUCCACCAAUAAUAUUGGCACUAUAGACUUGGCGAACCAGCUUUUAGUACGCCAUGGUUUUCUACAAGCCACAUGCACGCCGAGCAACAAUACAAAUCAAACAGAUUA ........................(((((............(((((.((.........)).)))))((((((.....))))))................)))))................ (-13.68 = -13.13 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:15 2006