Locus 820

Sequence ID 3L_DroMel_CAF1
Location 2,495,678 – 2,495,769
Length 91
Max. P 0.879234
window1261

overview

Window 1

Location 2,495,678 – 2,495,769
Length 91
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.38
Mean single sequence MFE -15.70
Consensus MFE -13.10
Energy contribution -12.74
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.18
Structure conservation index 0.83
SVM decision value 0.91
SVM RNA-class probability 0.879234
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2495678 91 + 23771897
ACCGCUUUGUGCUGCAUUUCAAUAUCC-ACA----------CA-AUUUUGAAAUUCAGCAAAAGG---AGAGAGAAGAGAACACACAAACACACAAGUUAAGCACG
...((((..(((((.(((((((.....-...----------..-...))))))).))))).....---...................(((......)))))))... ( -15.02)
>DroVir_CAF1 136760 90 + 1
ACCGCUUUAUGCUGCGUUUUAAUUUCC-GCGUAGAAGAAACCA-AUUUUGAAAUUCAGCAAAAGG---AGAGAAA-AAGA----------ACACGAUUUUAGCACA
..(.((((.(((((.(((((((.....-...............-...))))))).))))).))))---.).....-....----------................ ( -12.10)
>DroPse_CAF1 145848 90 + 1
ACCGCUUUGUGCUGCAUUUCAAUAUCCCACA--GAA-----AA-AUUUUGAAAUUCAGCAAAAGGAGGAGAGAAAAAAGAG--------AACACAAGUUUAGCAAA
.((.((((.(((((.(((((((.........--...-----..-...))))))).))))).)))).))............(--------(((....))))...... ( -18.63)
>DroMoj_CAF1 124482 90 + 1
ACCGCUUUAUGCUGUGUUUCAAUUUCC-GCGUGGUACAAACCA-AUUUUGAAAUUCAGCAAAAGG---AGAGAAA-AAGA----------ACACGAUUUUAGCACA
...(((......(((((((...(((((-...((((....))))-.(((((........)))))))---)))....-..))----------))))).....)))... ( -18.60)
>DroAna_CAF1 99421 90 + 1
ACCGCUUUGUGCUGCAUUUCAAUAUCC-ACA----------CAAAUUUUGAAAUUCAGCAAAAGG---AGAGAGAAG--AACACAAGAACACACAAGUUAACAACA
..(.((((.(((((.(((((((.....-...----------......))))))).)))))...))---)).).....--........................... ( -14.64)
>DroPer_CAF1 143976 87 + 1
ACCGCUUUGUGCUGCAUUUCAAUAUCCCACA--GAA-----AA-AUUUUGAAAUUCAGCAAAAGG---AGAGAAAAAAGAG--------AACACAAGUUUAGCAAA
..(.((((.(((((.(((((((.........--...-----..-...))))))).)))))...))---)).)........(--------(((....))))...... ( -15.23)
>consensus
ACCGCUUUGUGCUGCAUUUCAAUAUCC_ACA__GAA_____CA_AUUUUGAAAUUCAGCAAAAGG___AGAGAAAAAAGA__________ACACAAGUUUAGCACA
....((((.(((((.(((((((.........................))))))).))))))))).......................................... (-13.10 = -12.74 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:59 2006