Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 307,451 – 307,554 |
Length | 103 |
Max. P | 0.557793 |
Location | 307,451 – 307,554 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 80.76 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -22.41 |
Energy contribution | -22.38 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.30 |
Mean z-score | -1.17 |
Structure conservation index | 0.75 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 307451 103 - 23771897 AGCAGGAAUUAAUUUAUU---UGCUCU--CUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUCUUCGAGAUGGGCUUCGGCGAGCAACUGAACGAAACGUUGCACA .((((.............---(((((.--...)))))(((..((((((.(((((((.(((..........))).))))))).)))))).....))).....))))... ( -32.00) >DroPse_CAF1 29679 108 - 1 GCCAAUAACCAAUGUCUACCUUCAUCUUUGCAGAUUAUGUAGUGUUUGAUGAAGCCGAUCGCCUCUUUGAAAUGGGCUUCGGGGAGCAGUUGAAUGAAACGCUGCAUC ........((.........(((((((.(((((.....))))).....)))))))((((..(((.(........)))).)))))).(((((..........)))))... ( -27.40) >DroSec_CAF1 17229 104 - 1 AGCAGAAAUUAAUUUAAU---UGCUCU-CCUAGAGUACGUGGUGUUCGAUGAAGCCGAUCGACUCUUCGAGAUGGGAUUCGGCGAGCAACUGAACGAAACGCUGCACA .((((.............---(((((.-....)))))(((..((((((.((..(((((....(((........)))..)))))...))..))))))..)))))))... ( -30.60) >DroSim_CAF1 19578 104 - 1 AGCAGAAAUUAAUUUAAU---UGCUCU-CCUAGAGUACGUGGUGUUCGAUGAAGCCGAUCGACUCUUCGAGAUGGGAUUCGGCGAGCAACUAAACGAAACGCUGCACA .((((.............---(((((.-....)))))(((..((((((.((((.((.(((..........))).)).)))).)))))).....))).....))))... ( -29.80) >DroEre_CAF1 16921 104 - 1 AGCAGGAAAUAAUUUGGU---UGUUUA-CCUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUAUUUGAGAUGGGCUUCGGCGAGCAGCUGAACGAAACGCUGCACA .((((..........(((---.....)-))....((.((.(.((((((.(((((((.(((..........))).))))))).)))))).))).))......))))... ( -32.50) >DroPer_CAF1 29780 108 - 1 GCCAAUAACCAAUGUCUACCUUCAUCUUUGCAGAUUAUGUAGUGUUUGAUGAAGCCGAUCGCCUCUUUGAAAUGGGCUUCGGCGAGCAGUUGAAUGAAACGCUGCAUC (((......(((...((((....((((....))))...))))...)))..((((((.((..(......)..)).)))))))))..(((((..........)))))... ( -27.80) >consensus AGCAGAAAUUAAUUUAUU___UGCUCU_CCUAGAGUACGUGGUGUUUGAUGAAGCCGAUCGACUCUUCGAGAUGGGCUUCGGCGAGCAACUGAACGAAACGCUGCACA .((((................(((((......)))))(((((((((((.(((((((.(((..........))).))))))).)))))).))..))).....))))... (-22.41 = -22.38 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006