Locus 8198

Sequence ID 3L_DroMel_CAF1
Location 21,562,872 – 21,562,992
Length 120
Max. P 0.627548
window13414

overview

Window 4

Location 21,562,872 – 21,562,992
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -43.47
Consensus MFE -40.22
Energy contribution -40.00
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.77
Structure conservation index 0.93
SVM decision value 0.19
SVM RNA-class probability 0.627548
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21562872 120 - 23771897
GGAGGCAGCGGAUCUUCGGGGUCGGUAUCGCCGGCCCUUAGCGGCUCAAUGUCGCAGCCACCGCCGCGAUUCGAUCACCACACGGAUAUGAUGACCAUCCUCCAAUACGCUUCUCCGACA
(((((.((((((((.((((((((((.....)))))))...(((((.....)))))...........)))...)))).......(((...(((....))).)))....))))))))).... ( -45.80)
>DroSec_CAF1 10547 120 - 1
GGAGGCAGUGGAUCUUCGGGGUCGGUAUCGCCGGCCCUUAGCGGCUCAAUGUCGCAACCACCGCCGCGAUUCGAUCACCACACAGAUAUGAUGACCAUCCUCCAAUAUGCUUCUCCGACA
(((((((.((((.....((((((((.(((((.(((.....(((((.....))))).......)))))))))))))).))..........(((....))).))))...)))))))...... ( -42.30)
>DroSim_CAF1 10716 120 - 1
GGAGGCAGUGGAUCUUCGGGGUCGGUAUCGCCGGCCCUUAGCGGCUCAAUGUCGCAACCACCGCCGCGAUUCGAUCACCACACAGAUAUGAUGACCAUCCUCCAAUAUGCUUCUCCGACA
(((((((.((((.....((((((((.(((((.(((.....(((((.....))))).......)))))))))))))).))..........(((....))).))))...)))))))...... ( -42.30)
>consensus
GGAGGCAGUGGAUCUUCGGGGUCGGUAUCGCCGGCCCUUAGCGGCUCAAUGUCGCAACCACCGCCGCGAUUCGAUCACCACACAGAUAUGAUGACCAUCCUCCAAUAUGCUUCUCCGACA
((((((.((((......((((((((.....))))))))..(((((.....))))).....)))).))...((((((........))).)))........))))................. (-40.22 = -40.00 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:12 2006