Locus 8197

Sequence ID 3L_DroMel_CAF1
Location 21,562,592 – 21,562,712
Length 120
Max. P 0.740493
window13413

overview

Window 3

Location 21,562,592 – 21,562,712
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -54.83
Consensus MFE -53.76
Energy contribution -53.77
Covariance contribution 0.01
Combinations/Pair 1.08
Mean z-score -1.62
Structure conservation index 0.98
SVM decision value 0.45
SVM RNA-class probability 0.740493
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21562592 120 + 23771897
CCGCCGAUGGUGUACCCGCCGUGCUGCUAAGAUUGAGCAGUCCUUCAUUGCCAGACUGCGAAGGAGGCACCGGCGGCUUCGCUUCCGGCUCCGUCAGUCCAGUAGAGCUGGCAAUAGGUC
((((((..((((...((((((.((((((.......))))))(((((.((((......)))).)))))...))))))...))))..))))...(((((..(....)..)))))....)).. ( -50.50)
>DroSec_CAF1 10267 120 + 1
CCGCCGAUGGCGUACCCGCCGUGCUGCUUAGGUUGAGCAGUCCUUCAUUGCCAGAAGGCGGAGGAGGCACCGGCGGCUUCGCUUCCGGCUCCGUCAGUCCAGUAGAGCUGGCAGCAGGUC
((((((..((((...((((((.(((((((.....)))))))(((((.(((((....))))).)))))...))))))...))))..))))...(((((..(....)..)))))....)).. ( -56.90)
>DroSim_CAF1 10436 120 + 1
CCGCCGAUGGCGUACCCGCCGUGCUGCUUAGGUUGAGCAGUCCUUCAUUGCCAGAAGGCGGAGGAGGCACCGGCGGCUUUGCUUCCGGCUCCGUCAGUCCAGUAGAGCUGGCAGCAGGUC
((((((((((((....))))))(((((((.....)))))))(((((.(((((....))))).)))))...)))))).((((((.(((((((..(.......)..))))))).)))))).. ( -57.10)
>consensus
CCGCCGAUGGCGUACCCGCCGUGCUGCUUAGGUUGAGCAGUCCUUCAUUGCCAGAAGGCGGAGGAGGCACCGGCGGCUUCGCUUCCGGCUCCGUCAGUCCAGUAGAGCUGGCAGCAGGUC
((((((..((((...((((((.(((((((.....)))))))(((((.(((((....))))).)))))...))))))...))))..))))...(((((..(....)..)))))....)).. (-53.76 = -53.77 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:11 2006