Locus 8196

Sequence ID 3L_DroMel_CAF1
Location 21,562,167 – 21,562,367
Length 200
Max. P 0.726816
window13411 window13412

overview

Window 1

Location 21,562,167 – 21,562,287
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -22.57
Consensus MFE -21.62
Energy contribution -21.73
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.75
Structure conservation index 0.96
SVM decision value 0.41
SVM RNA-class probability 0.726816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21562167 120 + 23771897
AACUGAAUACAUUUAUUAUACUCUACAACAUAUUUAGAGCGAUUUUAUCGUACAUAUCGCAUCGCUUUCCUUAAGAUUUACCUAAUGCAUUUUUAAAGCAUAAGGUGAUUUCGGUUUGAU
(((((((............................((((((((.....((.......)).)))))))).........((((((.((((.........)))).)))))).))))))).... ( -21.80)
>DroSec_CAF1 9828 120 + 1
AACUGAAUACAUUUAUUAUACUCUACAACAUAUUUAGAGCGAUGUUAUCGUACAUAUCGCAUCGCUUUCCUUAAGAUUUACCUAAUGAAUUUUUAAAACAUAAGGUGAUUUCAGUUUGAU
(((((((............................((((((((((.((.......)).)))))))))).........((((((.(((...........))).)))))).))))))).... ( -23.30)
>DroSim_CAF1 9997 120 + 1
AACUGAAUACAUUUAUUAUACUCUACAACAUAUUUAGAGCGAUGUUAUCGUACAUAUCGCAUCGCUUUCCUUAAGAUUUACCUAAUGAAUUUUUUAAACAUAAGGUGAUUUCGGUUUGAU
(((((((............................((((((((((.((.......)).)))))))))).........((((((.(((...........))).)))))).))))))).... ( -22.60)
>consensus
AACUGAAUACAUUUAUUAUACUCUACAACAUAUUUAGAGCGAUGUUAUCGUACAUAUCGCAUCGCUUUCCUUAAGAUUUACCUAAUGAAUUUUUAAAACAUAAGGUGAUUUCGGUUUGAU
(((((((............................((((((((((.((.......)).)))))))))).........((((((.(((...........))).)))))).))))))).... (-21.62 = -21.73 +   0.11)

alignment

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secondary structure

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dotplot

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Window 2

Location 21,562,247 – 21,562,367
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -25.03
Consensus MFE -23.72
Energy contribution -24.50
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.95
SVM decision value 0.08
SVM RNA-class probability 0.572271
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21562247 120 + 23771897
CCUAAUGCAUUUUUAAAGCAUAAGGUGAUUUCGGUUUGAUCGACUUAACAGAAUCGGGAAUAAUCUCUGAGAUUUUGUACCAAAUUCGCCAUCGUGUUGUAAAAUUUUAUUUAUUUCCUU
..........(((((.(((((..(((((.((.(((............((((((((.(((......)))..))))))))))).)).)))))...))))).)))))................ ( -22.40)
>DroSec_CAF1 9908 120 + 1
CCUAAUGAAUUUUUAAAACAUAAGGUGAUUUCAGUUUGAUCGCCUUCACAGAAUCGGGAAUAAUCUCUGAGAUUUUGUACCAAAUUCGCCAUCGUGUUGUAAAAUUUUAUUUAUUUCCUU
...((((((.(((((.((((((((((((((.......))))))))).((((((((.(((......)))..))))))))...............))))).))))).))))))......... ( -27.40)
>DroSim_CAF1 10077 120 + 1
CCUAAUGAAUUUUUUAAACAUAAGGUGAUUUCGGUUUGAUCGCCUUCACAGAAUCGGGAAUAAUCUCUGAGAUUUUGUACCAAAUUCGCCAUCGUGUUGUAAAAUUUUAUUUAUUUCCUU
......(((((((...(((((..(((((.((.(((..((......))((((((((.(((......)))..))))))))))).)).)))))...)))))..)))))))............. ( -25.30)
>consensus
CCUAAUGAAUUUUUAAAACAUAAGGUGAUUUCGGUUUGAUCGCCUUCACAGAAUCGGGAAUAAUCUCUGAGAUUUUGUACCAAAUUCGCCAUCGUGUUGUAAAAUUUUAUUUAUUUCCUU
...((((((.(((((.((((((((((((((.......))))))))).((((((((.(((......)))..))))))))...............))))).))))).))))))......... (-23.72 = -24.50 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:10 2006