Locus 8195

Sequence ID 3L_DroMel_CAF1
Location 21,561,332 – 21,561,452
Length 120
Max. P 0.522776
window13410

overview

Window 0

Location 21,561,332 – 21,561,452
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -35.33
Consensus MFE -31.24
Energy contribution -30.80
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -1.81
Structure conservation index 0.88
SVM decision value -0.02
SVM RNA-class probability 0.522776
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21561332 120 + 23771897
ACUAUCAUGGUGAACUCCUCGUGGACCGAGAAUCAUAUUCUGCAACUGUGGGAUGUGCCCUUCAAAACACACCGGGUUUACCCUCCGUGCGAGGUUAGUCACCUAAAGAGCCUUCAGCAC
........(((((...(((((((((..(((...(((((((..(....)..)))))))...)))..........(((....))))))..))))))....)))))......((.....)).. ( -36.60)
>DroSec_CAF1 8988 120 + 1
ACUAUUAUGGUAAACUCCUCAUGGACCGAGAAUCAUAUUCUGCAACUGUGGGAUGUGCCCUUCAAAACCCACCGGGUUUACCCUCCGUGCGAGGUUAGCCACCUAAAGAGCCUUCAGCAU
.......((((.(((..(.((((((..(((...(((((((..(....)..)))))))...))).((((((...))))))....)))))).)..))).))))........((.....)).. ( -34.70)
>DroSim_CAF1 9158 120 + 1
ACUAUUAUGGUAAACUCCUCAUGGACCGAGAAUCAUAUUCUGCAACUGUGGGAUGUGCCCUUCAAAACCCACCGGGUUUACCCUCCGUGCGAGGUUAGCCACCUAAAGAGCCUUCAGCAU
.......((((.(((..(.((((((..(((...(((((((..(....)..)))))))...))).((((((...))))))....)))))).)..))).))))........((.....)).. ( -34.70)
>consensus
ACUAUUAUGGUAAACUCCUCAUGGACCGAGAAUCAUAUUCUGCAACUGUGGGAUGUGCCCUUCAAAACCCACCGGGUUUACCCUCCGUGCGAGGUUAGCCACCUAAAGAGCCUUCAGCAU
.......(((..(((..(.((((((..(((...(((((((..(....)..)))))))...)))..........(((....))))))))).)..)))..)))........((.....)).. (-31.24 = -30.80 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:08 2006