| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,553,487 – 21,553,599 |
| Length | 112 |
| Max. P | 0.541168 |
| Location | 21,553,487 – 21,553,599 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.86 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -15.68 |
| Energy contribution | -15.98 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.541168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21553487 112 + 23771897 -UUA-AAAUCUAAAACCUA---UUUGCUGCAGAUGGAAACUGGCCCCUGGCUUCAACCAGUCAAGAUGGGCUGUUAGAAGCUAUUCAACUACUAUCCAUCAAACCCACCACCGUCCC -...-..............---.........((((((.(.(((....(((((((...(((((......)))))...))))))).....))).).))))))................. ( -23.40) >DroSec_CAF1 1274 113 + 1 -UUACAAAUCUAAAACCUA---UUUUCUGCAGAUGGAAACUGGCCCCUGGCUUCAACCAGUCAAGAUGGGCUUUUAGAAGCUAUUCAACUACUAUCCAUCAAACCCACCACCGUCCC -..................---.........((((((....(((((.(((((......)))))....)))))....(((....)))........))))))................. ( -20.70) >DroSim_CAF1 1271 113 + 1 -UUACAAAUCUAAAACCUA---UUUUCUGCAGAUGGAAACUGGCCCCUGGCUUCAACCAGUCAAGAUGGGCUUUUAGAAGCUAUUCAACUACUAUCCAUCAAACCCACCACCGUCCC -..................---.........((((((....(((((.(((((......)))))....)))))....(((....)))........))))))................. ( -20.70) >DroEre_CAF1 1290 116 + 1 -AUAAAAAUCUAAAAUCUAAAACCUGUUGCAGAUGGAAACUGGCCCCUAGCUUCAACGAGUCAAGAUGGGCUGUUAGAAGCUAUUCAAUUACUAUCCAUCAAACCGACCACCGUCCC -..............................((((((..........((((((((((.((((......))))))).)))))))...........)))))).....(((....))).. ( -23.00) >DroYak_CAF1 1277 113 + 1 -GUACUAAUCAAAACCCUA---UUUGUUGCAGAUGGAAACUGGCCCCUAGCUUCCACCAGUCAAGAUGGGCUGCUAGAAGCUAUUCAAUUACUAUCCAUCAAACCAACCACCGUCCC -..................---...((((..((((((..........(((((((...(((((......)))))...)))))))...........))))))....))))......... ( -23.50) >DroPer_CAF1 631 107 + 1 AUUACUAACCAUA----------CCACUUCAGAUGGAAACUGCCCUUUGCCAUCAAGUAGUCAGGAUGGUCUACUAGAAGCUAUUCAGUUACUCUCUAUAAAACCAACCACAAUGAA .........((((----------(.((((..((((((((......))).))))))))).))..((.((((....((((((((....))))....))))....)))).))...))).. ( -16.50) >consensus _UUACAAAUCUAAAACCUA___UUUGCUGCAGAUGGAAACUGGCCCCUGGCUUCAACCAGUCAAGAUGGGCUGUUAGAAGCUAUUCAACUACUAUCCAUCAAACCCACCACCGUCCC ...............................((((((.(.(((....(((((((....((((......))))....))))))).....))).).))))))................. (-15.68 = -15.98 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:07 2006