Locus 8193

Sequence ID 3L_DroMel_CAF1
Location 21,547,013 – 21,547,115
Length 102
Max. P 0.999688
window13408

overview

Window 8

Location 21,547,013 – 21,547,115
Length 102
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 92.96
Mean single sequence MFE -17.57
Consensus MFE -16.15
Energy contribution -16.48
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.95
Structure conservation index 0.92
SVM decision value 3.89
SVM RNA-class probability 0.999688
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 21547013 102 + 23771897
UACAUCGACAUUUUGUGAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAA---------------UCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
......(((((((((((((((((.....))))))))).................---------------(((.((((((((....))))))))...))).......)))))).)).. ( -21.50)
>DroSec_CAF1 18775 102 + 1
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAA---------------UCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))...............---------------(((.((((((((....))))))))...)))..))))............ ( -17.40)
>DroSim_CAF1 22556 102 + 1
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAA---------------UCUUUACAAAUACACUAAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))...............---------------(((.(((((((......)))))))...)))..))))............ ( -16.60)
>DroEre_CAF1 36683 102 + 1
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCCAACAAAA---------------UCCUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))...............---------------....((((((((....))))))))........))))............ ( -15.30)
>DroYak_CAF1 37025 102 + 1
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCCAACAAAA---------------UCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))...............---------------(((.((((((((....))))))))...)))..))))............ ( -17.40)
>DroAna_CAF1 20092 117 + 1
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAAAAAAAACAUAAAACAAAAACUCUUUACAAAUACAAUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))..............................(((.((((((((....))))))))...)))..))))............ ( -17.20)
>consensus
UACAUCGACUUUUUGUCAAAAGCACAAAGCUUUUUACAACUAAUUCAAACAAAA_______________UCUUUACAAAUACACUUAUUUGUAUGUAGAAACGAUUGAAAUGCUCUC
...((((.....((((.((((((.....)))))).))))..............................(((.((((((((....))))))))...)))..))))............ (-16.15 = -16.48 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:06 2006