| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,494,071 – 2,494,166 |
| Length | 95 |
| Max. P | 0.890892 |
| Location | 2,494,071 – 2,494,166 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 77.06 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -12.76 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2494071 95 - 23771897 CAACA---CC-AAAUCAAACC---AAAAUCGCACCCUGCCAAUUGAAAUCGGUUUUAAAACAAAAGCCUCCCGUGGUGGUUUAGCCAACCGCCAGUUGCCCU .....---..-..........---......((.....))((((((.....((((((......))))))....(((((((.....)).))))))))))).... ( -18.80) >DroPse_CAF1 143965 100 - 1 --UCAAAUUCAAAAUCACAACAAAAAAUUCGCACUACGAAAUCGAAAAUCGGUAUCUAAACAAAAGCCUCCCGUGGUGGUCUAGCGAAUCGCCAGCUGCCAU --.........................((((.....))))((((.....))))...................((((..(.((.(((...))).)))..)))) ( -15.80) >DroEre_CAF1 117652 96 - 1 AAACA---CCAAAAUCAAACC---AAAUUCGCACCCUGCCAAUUGAAAUCGGUUUUUAAACAAAAGCCUCCCGUGGUGGUUUAGCCAACCGCCAGUUGCCCU .....---.............---......((.....))((((((.....(((((((....)))))))....(((((((.....)).))))))))))).... ( -19.30) >DroYak_CAF1 115789 96 - 1 AAACA---CCCAAAUCAAACC---AAAUUCGCACCCUGCCAAUUGAAAUCGGUUUUAAAACAAAAGCCUCCCGUGGCGGUUUAGCCAACCGCCAGUUGCCCU .(((.---.............---.((((.((.....)).))))......((((((......)))))).....((((((((.....)))))))))))..... ( -19.80) >DroAna_CAF1 97524 83 - 1 --ACA---CG-A-----AACC---AAAU--GCA---CCCCAAUCGCAACCGAUUUUUAAACAAAAGCCUCCCGGGGCGGUCUAGCCAAUCGCCAGCUGCCCU --...---..-.-----....---....--...---....(((((....)))))..................(((((((.((.((.....)).))))))))) ( -16.50) >DroPer_CAF1 142081 102 - 1 AAUCAAAUUCAAAAUCACAACAAAAAAUUCGCACUACGAAAUCGAAAAUCGGUAUCUAAACAAAAGCCUCCCGUGGUGGUCUAGCGAAUCGCCAGCUGCCAU ...........................((((.....))))((((.....))))...................((((..(.((.(((...))).)))..)))) ( -15.80) >consensus AAACA___CCAAAAUCAAACC___AAAUUCGCACCCCGCCAAUUGAAAUCGGUUUUUAAACAAAAGCCUCCCGUGGUGGUCUAGCCAACCGCCAGCUGCCCU ..............................(((.................((((((......)))))).....(((((((.......)))))))..)))... (-12.76 = -13.28 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:58 2006