Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,537,149 – 21,537,241 |
Length | 92 |
Max. P | 0.547687 |
Location | 21,537,149 – 21,537,241 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 85.15 |
Mean single sequence MFE | -29.64 |
Consensus MFE | -20.60 |
Energy contribution | -22.40 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.12 |
Mean z-score | -1.67 |
Structure conservation index | 0.70 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21537149 92 - 23771897 CAGUCGUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAUCCCUCUGGACCUCAAUACUCUGGAGGGA ...............((((((((.......))))))))..((((((((..((((.((((((-...))))))...)))).....)))))))).. ( -31.10) >DroSec_CAF1 8512 92 - 1 CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAACCCUCUGGACCUCAGCACUCUGGAGGGA ..((((((.......((((((((.......))))))))..(((((......))))))))))-)..(((((..((.........))..))))). ( -34.60) >DroSim_CAF1 7570 92 - 1 CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG-CAACCCUCUGGACCUCAGCACUCUGGAGGGA ..((((((.......((((((((.......))))))))..(((((......))))))))))-)..(((((..((.........))..))))). ( -34.60) >DroEre_CAF1 26442 81 - 1 CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGGUUCCAAGAAGGUGAGGAGGG-GAUCCCC-UGGA--CCU--------AAGGGA ...((((((......((((((((.......))))))))((((((((......))...((((-....)))-))))--)))--------)))))) ( -24.20) >DroYak_CAF1 26825 85 - 1 CAGUCCAUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGGUUCCAAGAAGGGGAGGAGGGAGAUCCCUAUGGAUCCCU--------AAGAGA ...(((.........((((((((.......))))))))...((((......)))))))(((.(((((....))))))))--------...... ( -23.70) >consensus CAGUCCUUUUAAUUACGCUGUCAAGUUGAAUGAUGGUGGGCUUCCAGGAAGGGGAGGAGGG_CAUCCCUCUGGACCUCA__ACUCUGGAGGGA ...((((((((....((((((((.......))))))))............((((.((((((....))))))...)))).......)))))))) (-20.60 = -22.40 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:58 2006