Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 21,536,588 – 21,536,695 |
Length | 107 |
Max. P | 0.998447 |
Location | 21,536,588 – 21,536,695 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -41.44 |
Consensus MFE | -25.02 |
Energy contribution | -25.90 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.14 |
Mean z-score | -2.40 |
Structure conservation index | 0.60 |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.988146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21536588 107 + 23771897 ACUUCAUUAAGGGCUCCUCCGCUCUUCCGCGCAUUUGAGGGCCAAGGAGCUGGAGCUGGAGCUCGAGCCGAAGGAAGAGACUGAGGAUCCAGCCGAGCUCCAGCUCU ...........(((((((..((((((..........))))))..)))))))((((((((((((((.((....(((............))).)))))))))))))))) ( -49.00) >DroSec_CAF1 7953 90 + 1 ACUUCAUUAAGGGCUCCUCCGCUCCUCCGCGC-----------AAGGAGCUGAAGCUGG------AGCCGGAGCAAGAGGCUGAGGAUCCAGCCGAGCUUCAGCUCU .(((((......((((((.(((......))).-----------.)))))))))))..((------(((.(((((....(((((......)))))..))))).))))) ( -38.30) >DroSim_CAF1 7011 90 + 1 ACUUCAUUAAGGGCUCCUCCGCUCCUCCGCGC-----------AAGGAGCUGAAGCUGG------AGCCGGAGCAAGAGGCUGAGGAUCCAGCCGAGCUUCAGCUCU .(((((......((((((.(((......))).-----------.)))))))))))..((------(((.(((((....(((((......)))))..))))).))))) ( -38.30) >DroEre_CAF1 25907 85 + 1 ACUUCAUUAAGGGC----CCGCUCCUCCGCGCACUCGGGGGCCAAGGAGCUGG------------AGCCGGAGGAAGAGGAU------CCAGCCGAACUCCAGCUCC ...........(((----((......(((......))))))))..((((((((------------((.(((.(((......)------))..)))..)))))))))) ( -36.70) >DroYak_CAF1 26281 103 + 1 ACUUCAUUAAGGGC----CCGCUCCUUCGCGCAUUUGGGGGCCAAGGAGCUGGAGCUGUAGCUGGAGCCAGAGGAAGAGGAUGAGGAGCCAGCCGAGCUUCAGCUCC ...........(((----((.(..............).)))))..((((((((((((...(((((..((...............))..)))))..)))))))))))) ( -44.90) >consensus ACUUCAUUAAGGGCUCCUCCGCUCCUCCGCGCA_U_G_GGGCCAAGGAGCUGGAGCUGG______AGCCGGAGGAAGAGGCUGAGGAUCCAGCCGAGCUUCAGCUCU ..........((((......)))).....................((((((((((((...........(.......).(((((......))))).)))))))))))) (-25.02 = -25.90 + 0.88)
Location | 21,536,588 – 21,536,695 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -43.12 |
Consensus MFE | -26.74 |
Energy contribution | -27.54 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.15 |
Mean z-score | -2.85 |
Structure conservation index | 0.62 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21536588 107 - 23771897 AGAGCUGGAGCUCGGCUGGAUCCUCAGUCUCUUCCUUCGGCUCGAGCUCCAGCUCCAGCUCCUUGGCCCUCAAAUGCGCGGAAGAGCGGAGGAGCCCUUAAUGAAGU .(((((((((((((((((((...............)))))).)))))))))))))..(((((((.(((.((.........)).).)).)))))))............ ( -49.56) >DroSec_CAF1 7953 90 - 1 AGAGCUGAAGCUCGGCUGGAUCCUCAGCCUCUUGCUCCGGCU------CCAGCUUCAGCUCCUU-----------GCGCGGAGGAGCGGAGGAGCCCUUAAUGAAGU .((((((.(((..((((((....))))))....))).)))))------)..(((((((((((((-----------.(((......))))))))))......)))))) ( -41.60) >DroSim_CAF1 7011 90 - 1 AGAGCUGAAGCUCGGCUGGAUCCUCAGCCUCUUGCUCCGGCU------CCAGCUUCAGCUCCUU-----------GCGCGGAGGAGCGGAGGAGCCCUUAAUGAAGU .((((((.(((..((((((....))))))....))).)))))------)..(((((((((((((-----------.(((......))))))))))......)))))) ( -41.60) >DroEre_CAF1 25907 85 - 1 GGAGCUGGAGUUCGGCUGG------AUCCUCUUCCUCCGGCU------------CCAGCUCCUUGGCCCCCGAGUGCGCGGAGGAGCGG----GCCCUUAAUGAAGU (((((((((((.(((..((------(......))).))))))------------))))))))..((((((((......)))......))----)))........... ( -41.50) >DroYak_CAF1 26281 103 - 1 GGAGCUGAAGCUCGGCUGGCUCCUCAUCCUCUUCCUCUGGCUCCAGCUACAGCUCCAGCUCCUUGGCCCCCAAAUGCGCGAAGGAGCGG----GCCCUUAAUGAAGU (((((((.((((.((((((..((...............))..))))))..)))).)))))))..(((((......((.(....).))))----)))........... ( -41.36) >consensus AGAGCUGAAGCUCGGCUGGAUCCUCAGCCUCUUCCUCCGGCU______CCAGCUCCAGCUCCUUGGCCC_C_A_UGCGCGGAGGAGCGGAGGAGCCCUUAAUGAAGU .(((((((((((.(((((((...............)))))))........)))))))))))...............((..((((.((......))))))..)).... (-26.74 = -27.54 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:57 2006